DBGET Search

DBGET	LinkDB	KEGG2

DBGET is an integrated database retrieval system for major biological databases at GenomeNet. It is also used in KEGG as the backbone retrieval system. DBGET is based on a flat-file view of molecular biology databases, where the database is considered as a collection of entries. Thus, any entry of any database can be retrieved by the combination of the database name and the entry name.

DBGET at GenomeNet

KEGG Databases in DBGET

Database name Abbre-
viation Content Remark

kegg brite br Functional hierarchies See KEGG BRITE

pathway path KEGG pathways See KEGG PATHWAY

module md KEGG modules

disease ds Human diseases See KEGG DISEASE

drug dr Drugs See KEGG DRUG

orthology ko KEGG orthology See KEGG ORTHOLOGY

genome gn KEGG organisms See KEGG GENES

genes Individual
organisms org
code Gene catalogs in high-quality genomes

dgenes Gene catalogs in draft genomes

egenes Gene catalogs generated as EST contigs

ligand compound cpd Chemical compounds See KEGG LIGAND

glycan gl Glycans

reaction rn Chemical Reactions

rpair rp Reactant pairs

enzyme ec Enzyme nomenclature

expression ex Gene expression profiles Submitted by authors

vgenome vgnm Viral genomes Computationally generated
from RefSeq

vgenes vg Viral gene catalogs

ogenes og Organelle gene catalogs

Last updated: December 1, 2009

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