DBGET Search

DBGET	LinkDB	KEGG2

DBGET is an integrated database retrieval system for major biological databases at GenomeNet. It is also used in KEGG as the backbone retrieval system. DBGET is based on a flat-file view of molecular biology databases, where the database is considered as a collection of entries. Thus, any entry of any database can be retrieved by the combination of the database name and the entry name (see the history of development).

DBGET at GenomeNet

KEGG Databases in DBGET

Database name Abbre-
viation Content Remark

kegg pathway path KEGG pathways See KEGG PATHWAY

brite br Functional hierarchies See KEGG BRITE

module md KEGG modules See KEGG MODULE

disease ds Human diseases See KEGG DISEASE

drug dr Drugs See KEGG DRUG

environ ev Health-related substances See KEGG ENVIRON

orthology ko KEGG orthology See KEGG ORTHOLOGY

genomes genome gn KEGG organisms See KEGG GENOME

egenome egnm EST datasets
mgenome mgnm Metagenomes

genes Complete
genomes org
code Gene catalogs in high-quality genomes See KEGG GENES

dgenes Gene catalogs in draft genomes

egenes EST datasets Gene catalogs generated as EST contigs

mgenes Metagenomes Gene catalogs in metagenomes

ligand compound cpd Chemical compounds See KEGG LIGAND

glycan gl Glycans

reaction rn Chemical Reactions

rpair rp Reactant pairs

rclass rc Reaction class

enzyme ec Enzyme nomenclature

expression ex Gene expression profiles Submitted by authors

vgenome vgnm Viral genomes Computationally
generated from RefSeq

vgenes vg Viral gene catalogs

egenes and megenes, as well as egenome and mgenome, are GenomeNet extensions of KEGG.

Last updated: February 1, 2012

KEGG	GenomeNet