KEGG   PATHWAY: dan03018
Entry
dan03018                    Pathway                                
Name
RNA degradation - Drosophila ananassae
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
dan03018  RNA degradation
dan03018

Other DBs
GO: 0006401
Organism
Drosophila ananassae [GN:dan]
Gene
6501420  m7GpppX diphosphatase [KO:K12584] [EC:3.6.1.59]
6497054  exosome complex component CSL4 [KO:K07573]
6494698  exosome complex component RRP4 [KO:K03679]
6496834  exosome complex component RRP40 [KO:K03681]
6493707  exosome complex component MTR3 [KO:K12587]
6494148  exosome complex exonuclease RRP42 [KO:K12589]
6498427  exosome complex component RRP41 [KO:K11600]
6500251  exosome complex component RRP46 [KO:K12590]
6503433  exosome complex exonuclease RRP44 [KO:K12585] [EC:3.1.13.-]
6497735  exosome RNA helicase MTR4 [KO:K12598] [EC:5.6.2.6]
6501508  helicase SKI2W [KO:K12599] [EC:5.6.2.6]
6495083  tetratricopeptide repeat protein 37 isoform X1 [KO:K12600]
6500634  WD repeat-containing protein 61 [KO:K12602]
26514865  CCR4-NOT transcription complex subunit 6 isoform X2 [KO:K12603] [EC:3.1.13.4]
6495348  CCR4-NOT transcription complex subunit 1 isoform X2 [KO:K12604]
6501431  regulator of gene activity isoform X1 [KO:K12605]
6493268  CCR4-NOT transcription complex subunit 7 isoform X1 [KO:K12581]
6502986  CCR4-NOT transcription complex subunit 9 [KO:K12606]
6499898  CCR4-NOT transcription complex subunit 10 [KO:K12607]
6495501  polyadenylate-binding protein [KO:K13126]
6495072  PAN2-PAN3 deadenylation complex catalytic subunit PAN2 [KO:K12571] [EC:3.1.13.4]
6506900  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 [KO:K12572]
6498559  ATP-dependent RNA helicase me31b [KO:K12614] [EC:5.6.2.7]
6506543  enhancer of mRNA-decapping protein 3 [KO:K12615]
6497059  enhancer of mRNA-decapping protein 4 homolog [KO:K12616]
6503195  5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
6498242  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
6495815  U6 snRNA-associated Sm-like protein LSm1 [KO:K12620]
26514390  U6 snRNA-associated Sm-like protein LSm3 [KO:K12622]
6496929  U6 snRNA-associated Sm-like protein LSm4 [KO:K12623]
6506153  U6 snRNA-associated Sm-like protein LSm5 [KO:K12624]
6495066  U6 snRNA-associated Sm-like protein LSm6 [KO:K12625]
6497369  U6 snRNA-associated Sm-like protein LSm7 [KO:K12626]
6498680  enolase [KO:K01689] [EC:4.2.1.11]
6499983  polyribonucleotide nucleotidyltransferase 1, mitochondrial [KO:K00962] [EC:2.7.7.8]
6494878  ATP-dependent 6-phosphofructokinase isoform X5 [KO:K00850] [EC:2.7.1.11]
6494224  heat shock 70 kDa protein cognate 5 [KO:K04043]
6503005  heat shock protein 60A [KO:K04077] [EC:5.6.1.7]
6503339  60 kDa heat shock protein homolog 1, mitochondrial [KO:K04077] [EC:5.6.1.7]
6498382  60 kDa heat shock protein homolog 2, mitochondrial [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
dan03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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