KEGG   PATHWAY: ypb00270
Entry
ypb00270                    Pathway                                
Name
Cysteine and methionine metabolism - Yersinia pseudotuberculosis PB1/+ (serotype 1B)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
ypb00270  Cysteine and methionine metabolism
ypb00270

Module
ypb_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:ypb00270]
ypb_M00021  Cysteine biosynthesis, serine => cysteine [PATH:ypb00270]
ypb_M00034  Methionine salvage pathway [PATH:ypb00270]
Other DBs
GO: 0006534 0006555
Organism
Yersinia pseudotuberculosis PB1/+ (serotype 1B) [GN:ypb]
Gene
YPTS_0067  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
YPTS_1010  Pyridoxal-5'-phosphate-dependent protein beta subunit [KO:K01738] [EC:2.5.1.47]
YPTS_2814  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
YPTS_3524  cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
YPTS_0359  cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
YPTS_2276  aminotransferase class I and II [KO:K14155] [EC:4.4.1.13]
YPTS_2826  aminotransferase class I and II [KO:K14155] [EC:4.4.1.13]
YPTS_3839  methionine synthase [KO:K00548] [EC:2.1.1.13]
YPTS_0264  5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [KO:K00549] [EC:2.1.1.14]
YPTS_3335  S-adenosylmethionine synthetase [KO:K00789] [EC:2.5.1.6]
YPTS_0750  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
YPTS_0751  spermidine synthase [KO:K00797] [EC:2.5.1.16]
YPTS_2592  autoinducer synthesis protein [KO:K22956] [EC:2.3.1.184]
YPTS_3394  autoinducer synthesis protein [KO:K22956] [EC:2.3.1.184]
YPTS_0780  purine or other phosphorylase family 1 [KO:K01243] [EC:3.2.2.9]
YPTS_0919  5-methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
YPTS_0886  protein of unknown function DUF152 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
YPTS_0918  translation initiation factor, aIF-2BI family [KO:K08963] [EC:5.3.1.23]
YPTS_0915  methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
YPTS_0916  2,3-diketo-5-methylthio-1-phosphopentane phosphatase [KO:K09880] [EC:3.1.3.77]
YPTS_0917  Acireductone dioxygenase ARD [KO:K08967] [EC:1.13.11.53 1.13.11.54]
YPTS_0400  aminotransferase class I and II [KO:K00832] [EC:2.6.1.57]
YPTS_2453  conserved hypothetical protein [KO:K08968] [EC:1.8.4.14]
YPTS_1903  C-5 cytosine-specific DNA methylase [KO:K00558] [EC:2.1.1.37]
YPTS_0866  quorum-sensing autoinducer 2 (AI-2), LuxS [KO:K07173] [EC:4.4.1.21]
YPTS_3836  aspartate kinase [KO:K00928] [EC:2.7.2.4]
YPTS_0626  aspartate kinase [KO:K12524] [EC:2.7.2.4 1.1.1.3]
YPTS_0109  aspartate kinase [KO:K12525] [EC:2.7.2.4 1.1.1.3]
YPTS_3990  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
YPTS_3844  homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
YPTS_0108  O-succinylhomoserine (thiol)-lyase [KO:K01739] [EC:2.5.1.48]
YPTS_0145  branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
YPTS_0865  glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
YPTS_3340  glutathione synthetase [KO:K01920] [EC:6.3.2.3]
YPTS_1536  aminotransferase class I and II [KO:K00813] [EC:2.6.1.1]
YPTS_1323  Rhodanese domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
YPTS_2720  aspartate racemase [KO:K25316] [EC:5.1.1.10]
YPTS_2470  alanine racemase [KO:K25317] [EC:5.1.1.10]
YPTS_1846  pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family [KO:K05396] [EC:4.4.1.15]
YPTS_0490  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
YPTS_1771  L-serine dehydratase 1 [KO:K01752] [EC:4.3.1.17]
YPTS_2831  cysteine synthase B [KO:K12339] [EC:2.5.1.144]
YPTS_3321  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00058] [EC:1.1.1.95 1.1.1.399]
YPTS_1412  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00058] [EC:1.1.1.95 1.1.1.399]
YPTS_1515  phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
ypb00010  Glycolysis / Gluconeogenesis
ypb00250  Alanine, aspartate and glutamate metabolism
ypb00260  Glycine, serine and threonine metabolism
ypb00290  Valine, leucine and isoleucine biosynthesis
ypb00430  Taurine and hypotaurine metabolism
ypb00480  Glutathione metabolism
ypb00620  Pyruvate metabolism
ypb00640  Propanoate metabolism
ypb00770  Pantothenate and CoA biosynthesis
ypb00900  Terpenoid backbone biosynthesis
ypb00920  Sulfur metabolism
KO pathway
ko00270   
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