KEGG WebLinks

This is an introductory document for retrieving html files from and creating links to KEGG at http://www.kegg.jp/.

[ Top | KEGG API | KEGG MEDICUS API | KEGG WebLinks | KEGG Database Entry Format ]

REST-style URL

Retrieve entry

URL form

http://www.kegg.jp/entry/<dbentries>

<dbentries> = <keggid>1[+<keggid>2...]

Examples

http://www.kegg.jp/entry/K00873
http://www.kegg.jp/entry/C00022
http://www.kegg.jp/entry/map00010

See also

KEGG API for more details of database entry specification <keggid> including kid, db:entry and org:gene.

Retrieve pathway map with simple coloring

URL form

http://www.kegg.jp/pathway/<mapid>[+<map_objects>]

<mapid> = KEGG pathway map identifier
<map_objects> = <keggid>1[+<keggid>2...]

Examples

http://www.kegg.jp/pathway/map00010
http://www.kegg.jp/pathway/map00010+K00873+C00022
http://www.kegg.jp/pathway/hsa00010
http://www.kegg.jp/pathway/hsa00010+5315+C00022
http://www.kegg.jp/pathway/map00010+M00002 (KEGG module in pathway map)

See also

Search Pathway in KEGG Mapper for more details of map object specification <keggid>.

Retrieve module map with simple coloring

URL form

http://www.kegg.jp/module/<modid>[+<mod_objects>]

<modid> = KEGG module identifier
<mod_objects> = <keggid>1[+<keggid>2...]

Examples

http://www.kegg.jp/module/M00010
http://www.kegg.jp/module/hsa_M00095+3156

See also

Search Module in KEGG Mapper for more details of module object specification <keggid>.

Retrieve brite hierarchy with simple coloring

URL form

http://www.kegg.jp/brite/<brid>[+<br_objects>]

<brid> = KEGG brite hierarchy identifier
<br_objects> = <keggid>1[+<keggid>2...]

Examples

http://www.kegg.jp/brite/ko00001
http://www.kegg.jp/brite/br08303
http://www.kegg.jp/brite/br08601+hsa

See also

Search Brite in KEGG Mapper for more details of brite object specification <keggid>.

Links to Analysis Tools

Pathway map coloring

URL form

http://www.kegg.jp/kegg-bin/show_pathway?<mapid>/default%3d<dcolor>/<keggid>1%09<bgcolor>,<fgcolor>/...

<mapid> = pathway map identifier, such as map00010 and hsa00010
<keggid> = KEGG identifer in the form of db:entry, where db: can be omitted
<dcolor> = default background color, "%3d" represents "=" in ASCII code
<bgcolor> = background color, "%09" represents TAB in ASCII code
<fgcolor> = foreground color

Note

Use "%23" in ASCII code instead of "#" for color specification.

Examples

http://www.kegg.jp/kegg-bin/show_pathway?map00400/default%3dpink/1.14.16.1%09,blue/C00079%09,red/C00166
http://www.kegg.jp/kegg-bin/show_pathway?map00400/1.14.16.1%09,blue/C00079%09,red/C00166%09%23005050

See also

Search&Color Pathway in KEGG Mapper for more details of KEGG identifier specification <keggid>.

Pathway map coloring (POST)

URL form

http://www.kegg.jp/kegg-bin/show_pathway?map=<mapid>&multi_query=<dataset>

<mapid> = pathway map identifier, such as map00010 and hsa00010
<dataset> = multiline query data (KEGG identifier + bgcolor,fgcolor in each line)

Note

<dataset> corresponds to the multi-line textarea in KEGG Mapper Search&Color Pathway.

Examples

http://www.kegg.jp/kegg-bin/show_pathway?map=hsa00010&multi_query=7167+red%2Cblue%0D%0AC00118+pink

See also

Search&Color Pathway in KEGG Mapper for more details of KEGG identifier specification <keggid>.

Pathway map coloring (POST, WebGL)

URL form

http://www.kegg.jp/kegg-bin/show_pathway_webgl?map=<mapid>&multi_query=<dataset>

<mapid> = pathway map identifier, such as map00010 and hsa00010
<dataset> = multiline query data (KEGG identifier + numerical values in each line)

Note

<dataset> corresponds to the multi-line textarea in KEGG Mapper Color Pathway WebGL.

Examples

http://www.kegg.jp/kegg-bin/show_pathway_webgl?map=syn02020&multi_query=%23keggid%09wild-type%09delta-Hik33%0D%0Asyn:sll0337%090.72%091.29%0D%0Asyn:slr0081%090.49%090.49

See also

Color Pathway WebGL in KEGG Mapper for more details of KEGG identifier specification <keggid>.

SSDB ortholog search

URL form

http://www.kegg.jp/ssdb-bin/ssdb_best?org_gene=<org:gene>

<org:gene> = KEGG GENES identifier (organism code and gene name)

Examples

http://www.kegg.jp/ssdb-bin/ssdb_best?org_gene=syn:sll1450

SSDB paralog search

URL form

http://www.kegg.jp/ssdb-bin/ssdb_paralog?org_gene=<org:gene>

<org:gene> = KEGG GENES identifier (organism code and gene name)

Examples

http://www.kegg.jp/ssdb-bin/ssdb_paralog?org_gene=syn:sll1450

SSDB conserved gene cluster search

URL form

http://www.kegg.jp/ssdb-bin/ssdb_gclust?org_gene=<org:gene>

<org:gene> = KEGG GENES identifier (organism code and gene name)

Examples

http://www.kegg.jp/ssdb-bin/ssdb_gclust?org_gene=syn:sll1450


Last updated: September 19, 2014