KEGG Database Entry Format

This document describes the data field names in the web page and the corresponding flat file under the DBGET system.

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The content of each field is described in the link from "Web page".

KEGG PATHWAY

Web page      Flat file

EntryENTRY
NameNAME
DescriptionDESCRIPTION
ClassCLASS
Pathway mapPATHWAY_MAP
ModuleMODULE
DiseaseDISEASE
DrugDRUG
Other DBsDBLINKS
OrganismORGANISM
OrthologyORTHOLOGY
GeneGENE
EnzymeENZYME
ReactionREACTION
CompoundCOMPOUND
ReferenceREFERENCE
Related pathwayREL_PATHWAY
KO pathwayKO_PATHWAY

KEGG MODULE

Web page      Flat file

EntryENTRY
NameNAME
DefinitionDEFINITION
Module map-
OrthologyORTHOLOGY
ClassCLASS
PathwayPATHWAY
BriteBRITE
OrganismORGANISM
GeneGENE
ReactionREACTION
CompoundCOMPOUND
CommentCOMMENT
Other DBsDBLINKS
ReferenceREFERENCE
KO moduleREF_MODULE

KEGG DISEASE

Web page      Flat file

EntryENTRY
NameNAME
DescriptionDESCRIPTION
CategoryCATEGORY
PathwayPATHWAY
GeneGENE
CarcinogenCARCINOGEN
Env factorENV_FACTOR
PathogenPATHOGEN
MicrobiomeMICROBIOME
MarkerMARKER
DrugDRUG
CommentCOMMENT
Other DBsDBLINKS
ReferenceREFERENCE

KEGG DRUG

Web page      Flat file

EntryENTRY
NameNAME
ProductPRODUCT
FormulaFORMULA
Exact massEXACT_MASS
Mol weightMOL_WEIGHT
Structure(gif image)
ComponentCOMPONENT
SequenceSEQUENCE
SourceSOURCE
ActivityACTIVITY
RemarkREMARK
CommentCOMMENT
TargetTARGET
MetabolismMETABOLISM
InteractionINTERACTION
Structure mapSTR_MAP
Other mapOTHER_MAP
BriteBRITE
Other DBsDBLINKS
KCF dataATOM / BOND / BRACKET

KEGG ENVIRON

Web page      Flat file

EntryENTRY
NameNAME
CategoryCATEGORY
ComponentCOMPONENT
SourceSOURCE
RemarkREMARK
CommentCOMMENT
BriteBRITE
Other DBsDBLINKS

KEGG ORTHOLOGY (KO)

Web page      Flat file

EntryENTRY
NameNAME
DefinitionDEFINITION
PathwayPATHWAY
ModuleMODULE
DiseaseDISEASE
BriteBRITE
Other DBsDBLINKS
GenesGENES
ReferenceREFERENCE

KEGG GENOME

Web page      Flat file

EntryENTRY
NameNAME
DefinitionDEFINITION
AnnotationANNOTATION
TaxonomyTAXONOMY
Data sourceDATA_SOURCE
Original DBORIGINAL_DB
KeywordsKEYWORDS
DiseaseDISEASE
CommentCOMMENT
ChromosomeCHROMOSOME
PlasmidPLASMID
StatisticsSTATISTICS
ReferenceREFERENCE

KEGG GENES

Web page      Flat file

EntryENTRY
Gene nameNAME
DefinitionDEFINITION
OrthologyORTHOLOGY
OrganismORGANISM
PathwayPATHWAY
ModuleMODULE
DiseaseDISEASE
Drug targetDRUG_TARGET
ClassCLASS
SSDB-
MotifMOTIF
Other DBsDBLINKS
StructureSTRUCTURE
PositionPOSITION
AA seqAASEQ
NT seqNTSEQ

KEGG COMPOUND

Web page      Flat file

EntryENTRY
NameNAME
FormulaFORMULA
Exact massEXACT_MASS
Mol weightMOL_WEIGHT
Structure(gif image)
SequenceSEQUENCE
RemarkREMARK
CommentCOMMENT
ReactionREACTION
PathwayPATHWAY
EnzymeENZYME
BriteBRITE
ReferenceREFERENCE
Other DBsDBLINKS
KCF dataATOM / BOND / BRACKET

KEGG GLYCAN

Web page      Flat file

EntryENTRY
NameNAME
CompositionCOMPOSITION
MassMASS
Structure(gif image)
ClassCLASS
RemarkREMARK
CommentCOMMENT
ReactionREACTION
PathwayPATHWAY
EnzymeENZYME
OrthologyORTHOLOGY
ReferenceREFERENCE
Other DBsDBLINKS
KCF dataNODE / EDGE / BRACKET

KEGG REACTION

Web page      Flat file

EntryENTRY
NameNAME
DefinitionDEFINITION
EquationEQUATION
(blank)(gif image)
RemarkREMARK
CommentCOMMENT
RPairRPAIR
EnzymeENZYME
PathwayPATHWAY
OrthologyORTHOLOGY
ReferenceREFERENCE

KEGG RPAIR

Web page      Flat file

EntryENTRY
NameNAME
(blank)(gif image)
CompoundCOMPOUND
TypeTYPE
RDMRDM
RClassRCLASS
Related pairRELATEDPAIR
ReactionREACTION
EnzymeENZYME
KCF dataALIGN / ENTRY1 / ENTRY2

KEGG RCLASS

Web page      Flat file

EntryENTRY
DefinitionDEFINITION
(blank)(gif image)
RPairRPAIR
Related class-
ReactionREACTION
EnzymeENZYME
PathwayPATHWAY
OrthologyORTHOLOGY

KEGG ENZYME

Web page      Flat file

EntryENTRY
NameNAME
ClassCLASS
SysnameSYSNAME
Reaction(IUBMB)REACTION
Reaction(KEGG)ALL_REAC
SubstrateSUBSTRATE
ProductPRODUCT
CommentCOMMENT
PathwayPATHWAY
OrthologyORTHOLOGY
GenesGENES
ReferenceREFERENCE
Other DBsDBLINKS


Last updated: February 1, 2014