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KEGG Mapper – Color Pathway 3D

KEGG Mapper
KEGG Atlas
KEGG		 Search Pathway
Search Brite
Search Module		 Search&Color Pathway
Search&Color Brite
Search&Color Module		 Color Pathway
Color Pathway 3D
Join Brite		 Reconstruct Pathway
Reconstruct Brite
Reconstruct Module


Select KEGG pathway map: Enter pathway map identifier, such as hsa05200
Enter file name containing the data:

 Numerical value example: Somatic mutations
   hsa05200 + CML-COSMIC

File type: Numerical value ( Convert to log scale)



Color Pathway 3D is a variant of the Color Pathway tool, where the result is shown in the KEGG Atlas 3D viewer. The input data contains numerical values associated with the KEGG objects, which are given in tab-delimited columns. The objects in different types of pathway maps are specified by the following KEGG identifiers and aliases.

Prefix Type KEGG identifier Alias
map Reference pathway - metabolic K/R/EC numbers, C/G/D numbers KO alias
map Reference pathway - non-metabolic K number, C/G/D numbers KO alias
ko Reference pathway (KO) K number, C/G/D numbers KO alias
ec Reference pathway (EC) EC number, C/G/D numbers
rn Reference pathway (Reaction) R number, C/G/D numbers RP/RC numbers
org Organism-specific pathway gene identifier, C/G/D numbers gene alias (gene name),
K/EC numbers

Last updated: May 1, 2013