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| Motifs : | pf:AAA_30 | AAA domain
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| | pf:ANT | Phage antirepressor protein KilAC domain
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| | pf:Arg_repressor | Arginine repressor, DNA binding domain
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| | pf:AroM | AroM protein
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| | pf:Arteri_nsp7a | Arterivirus nonstructural protein 7 alpha
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| | pf:Beach | Beige/BEACH domain
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| | pf:CENP-B_N | CENP-B N-terminal DNA-binding domain
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| | pf:CYTL1 | Cytokine-like protein 1
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| | pf:DDE_1 | DDE superfamily endonuclease
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| | pf:DDE_3 | DDE superfamily endonuclease
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| | pf:DDE_Tnp_ISAZ013 | Rhodopirellula transposase DDE domain
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| | pf:DUF1153 | Protein of unknown function (DUF1153)
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| | pf:DUF1580 | Protein of unknown function (DUF1580)
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| | pf:DUF1804 | Protein of unknown function (DUF1804)
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| | pf:DUF3045 | Protein of unknown function (DUF3045)
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| | pf:DUF4041 | Domain of unknown function (DUF4041)
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| | pf:DUF6494 | |
| | pf:DUF746 | Domain of Unknown Function (DUF746)
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| | pf:Death | Death domain
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| | pf:FUR | Ferric uptake regulator family
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| | pf:FeoC | FeoC like transcriptional regulator
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| | pf:GH3 | GH3 auxin-responsive promoter
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| | pf:GST_N_2 | Glutathione S-transferase, N-terminal domain
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| | pf:Gam | Host-nuclease inhibitor protein Gam
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| | pf:GerE | Bacterial regulatory proteins, luxR family
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| | pf:HTH_1 | Bacterial regulatory helix-turn-helix protein, lysR family
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| | pf:HTH_11 | HTH domain
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| | pf:HTH_17 | Helix-turn-helix domain
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| | pf:HTH_18 | Helix-turn-helix domain
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| | pf:HTH_20 | Helix-turn-helix domain
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| | pf:HTH_21 | HTH-like domain
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| | pf:HTH_23 | Homeodomain-like domain
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| | pf:HTH_28 | Helix-turn-helix domain
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| | pf:HTH_29 | Winged helix-turn helix
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| | pf:HTH_3 | Helix-turn-helix
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| | pf:HTH_31 | Helix-turn-helix domain
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| | pf:HTH_32 | Homeodomain-like domain
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| | pf:HTH_33 | Winged helix-turn helix
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| | pf:HTH_36 | Helix-turn-helix domain
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| | pf:HTH_38 | Helix-turn-helix domain
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| | pf:HTH_40 | Helix-turn-helix domain
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| | pf:HTH_50 | |
| | pf:HTH_7 | Helix-turn-helix domain of resolvase
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| | pf:HTH_Tnp_1 | Transposase
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| | pf:HTH_Tnp_4 | Helix-turn-helix of DDE superfamily endonuclease
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| | pf:HTH_Tnp_IS630 | Transposase
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| | pf:HTH_Tnp_ISL3 | Helix-turn-helix domain of transposase family ISL3
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| | pf:HTH_Tnp_Tc3_2 | Transposase
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| | pf:HTH_Tnp_Tc3_2_like | |
| | pf:HTH_WhiA | WhiA C-terminal HTH domain
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| | pf:HTH_psq | helix-turn-helix, Psq domain
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| | pf:Inhibitor_I78 | Peptidase inhibitor I78 family
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| | pf:LPD11 | |
| | pf:LRRCT_2 | |
| | pf:LZ_Tnp_IS481 | leucine-zipper of insertion element IS481
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| | pf:Lge1 | Transcriptional regulatory protein LGE1
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| | pf:LysM | LysM domain
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| | pf:MarR | MarR family
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| | pf:MarR_2 | MarR family
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| | pf:MerR | MerR family regulatory protein
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| | pf:MerR_1 | MerR HTH family regulatory protein
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| | pf:NYD-SP28_assoc | Sperm tail C-terminal domain
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| | pf:Nop5_N | |
| | pf:OTU1_UBXL | |
| | pf:PAX | 'Paired box' domain
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| | pf:Phage_CI_repr | Bacteriophage CI repressor helix-turn-helix domain
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| | pf:Phage_Mu_Gp27 | |
| | pf:Phage_int_SAM_1 | Phage integrase, N-terminal SAM-like domain
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| | pf:Phage_terminase | Phage terminase small subunit
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| | pf:Prot_ATP_ID_OB_C | |
| | pf:RE_XamI | XamI restriction endonuclease
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| | pf:SAP | SAP domain
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| | pf:SYF2 | SYF2 splicing factor
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| | pf:Sigma70_r4 | Sigma-70, region 4
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| | pf:Sigma70_r4_2 | Sigma-70, region 4
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| | pf:Slx4 | Slx4 endonuclease
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| | pf:SpoIIID | Stage III sporulation protein D
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| | pf:TAF1C_beta-prop | |
| | pf:TBPIP_C | |
| | pf:Tn7_Tnp_TnsA_C | TnsA endonuclease C terminal
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| | pf:TnsD | Tn7-like transposition protein D
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| | pf:Trp_repressor | Trp repressor protein
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| | pf:VasL | Type VI secretion system, EvfB, or VasL
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| | pf:Vma12 | Endoplasmic reticulum-based factor for assembly of V-ATPase
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| | pf:YfeC-like | |
| | pf:rve | Integrase core domain
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| | pf:tify | tify domain
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