Search common motifs in selected sequences


  
Motifs : pf:4HB_MCP_1Four helix bundle sensory module for signal transduction
 pf:5_3_exonuc5'-3' exonuclease, C-terminal SAM fold
 pf:5_3_exonuc_N5'-3' exonuclease, N-terminal resolvase-like domain
 pf:AAAATPase family associated with various cellular activities (AAA)
 pf:AAA_14AAA domain
 pf:AAA_16AAA ATPase domain
 pf:AAA_22AAA domain
 pf:AAA_23AAA domain
 pf:AAA_27AAA domain
 pf:AAA_29P-loop containing region of AAA domain
 pf:ACC_epsilonAcyl-CoA carboxylase epsilon subunit
 pf:AC_1
 pf:ALFShort repeats of unknown function
 pf:ALTTAQ_rpt
 pf:ATPase_2ATPase domain predominantly from Archaea
 pf:AcetylCoA_hyd_CAcetyl-CoA hydrolase/transferase C-terminal domain
 pf:Ad_Cy_regAdenylate cyclase regulatory domain
 pf:Aminotran_3Aminotransferase class-III
 pf:Aminotran_5Aminotransferase class-V
 pf:Arg_decarbox_C
 pf:AutotransporterAutotransporter beta-domain
 pf:Beta_elim_lyaseBeta-eliminating lyase
 pf:BibA_N
 pf:Brr6_like_C_CDi-sulfide bridge nucleocytoplasmic transport domain
 pf:CD4-extracelCD4, extracellular
 pf:CHCalponin homology (CH) domain
 pf:CPSF100_CCleavage and polyadenylation factor 2 C-terminal
 pf:Chi-conotoxin
 pf:CoA_transCoenzyme A transferase
 pf:Cys_Met_Meta_PPCys/Met metabolism PLP-dependent enzyme
 pf:DNA_pol_ADNA polymerase family A
 pf:DNA_pol_A_exo13'-5' exonuclease
 pf:DO-GTPase2
 pf:DUF2460Conserved hypothetical protein 2217 (DUF2460)
 pf:DUF3626Protein of unknown function (DUF3626)
 pf:DUF5609
 pf:DUF575Protein of unknown function (DUF575)
 pf:DUF621Protein of unknown function (DUF621)
 pf:DUF746Domain of Unknown Function (DUF746)
 pf:DegT_DnrJ_EryC1DegT/DnrJ/EryC1/StrS aminotransferase family
 pf:E1-E2_ATPaseE1-E2 ATPase
 pf:Erf4Golgin subfamily A member 7/ERF4 family
 pf:ErmC23S rRNA methylase leader peptide (ErmC)
 pf:FAPFibronectin-attachment protein (FAP)
 pf:FGFFibroblast growth factor
 pf:FRG1FRG1-like domain
 pf:FascinFascin domain
 pf:GAS2Growth-Arrest-Specific Protein 2 Domain
 pf:GDC-PGlycine cleavage system P-protein
 pf:GatB_YqeyGatB domain
 pf:GerEBacterial regulatory proteins, luxR family
 pf:Glyco_hydro_36CGlycosyl hydrolase family 36 C-terminal domain
 pf:Glycophorin_AGlycophorin A
 pf:HADhaloacid dehalogenase-like hydrolase
 pf:HAD_2Haloacid dehalogenase-like hydrolase
 pf:HHH_2Helix-hairpin-helix motif
 pf:HHH_5Helix-hairpin-helix domain
 pf:HMAHeavy-metal-associated domain
 pf:HTH_1Bacterial regulatory helix-turn-helix protein, lysR family
 pf:HTH_11HTH domain
 pf:HTH_17Helix-turn-helix domain
 pf:HTH_23Homeodomain-like domain
 pf:HTH_26Cro/C1-type HTH DNA-binding domain
 pf:HTH_28Helix-turn-helix domain
 pf:HTH_29Winged helix-turn helix
 pf:HTH_3Helix-turn-helix
 pf:HTH_31Helix-turn-helix domain
 pf:HTH_36Helix-turn-helix domain
 pf:HTH_50
 pf:HTH_59
 pf:HTH_AsnC-typeAsnC-type helix-turn-helix domain
 pf:HTH_DeoRDeoR-like helix-turn-helix domain
 pf:HTH_ParB
 pf:HTH_Tnp_1Transposase
 pf:HTH_Tnp_ISL3Helix-turn-helix domain of transposase family ISL3
 pf:Hydrolasehaloacid dehalogenase-like hydrolase
 pf:Hydrolase_3haloacid dehalogenase-like hydrolase
 pf:Hydrolase_6Haloacid dehalogenase-like hydrolase
 pf:IF2_NTranslation initiation factor IF-2, N-terminal region
 pf:Ion_trans_2Ion channel
 pf:Kre9_KNH
 pf:LIMLIM domain
 pf:LRR_4Leucine Rich repeats (2 copies)
 pf:LRR_8Leucine rich repeat
 pf:LYTBLytB protein
 pf:LZ_Tnp_IS481leucine-zipper of insertion element IS481
 pf:Lipase_GDSLGDSL-like Lipase/Acylhydrolase
 pf:Lipase_GDSL_2GDSL-like Lipase/Acylhydrolase family
 pf:MerRMerR family regulatory protein
 pf:MerR_1MerR HTH family regulatory protein
 pf:Molybdop_Fe4S4Molybdopterin oxidoreductase Fe4S4 domain
 pf:MolybdopterinMolybdopterin oxidoreductase
 pf:Molydop_bindingMolydopterin dinucleotide binding domain
 pf:MutS_IMutS domain I
 pf:MutS_IIMutS domain II
 pf:MutS_IIIMutS domain III
 pf:MutS_IVMutS family domain IV
 pf:MutS_VMutS domain V
 pf:NACHTNACHT domain
 pf:NB-ARCNB-ARC domain
 pf:NYN_YacPYacP-like NYN domain
 pf:Nif11Nitrogen fixation protein of unknown function
 pf:PA14PA14 domain
 pf:PATRPassenger-associated-transport-repeat
 pf:PCB_OBPenicillin-binding protein OB-like domain
 pf:PHPH domain
 pf:POR_NPyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
 pf:Peptidase_C32Equine arteritis virus putative proteinase
 pf:Peptidase_M48Peptidase family M48
 pf:Peptidase_M56BlaR1 peptidase M56
 pf:Peripla_BP_6Periplasmic binding protein
 pf:Phage_TAC_7Phage tail assembly chaperone proteins, E, or 41 or 14
 pf:PhosphodiestType I phosphodiesterase / nucleotide pyrophosphatase
 pf:PlugTonB-dependent Receptor Plug Domain
 pf:Poly_A_pol_cat
 pf:PsbPPsbP
 pf:PsbP_C
 pf:RXLRRXLR phytopathogen effector protein, Avirulence activity
 pf:RecA_C
 pf:Rhabdo_M1Rhabdovirus M1 matrix protein (M1 polymerase-associated protein)
 pf:RhoGEFRhoGEF domain
 pf:RhoGEF67_u2Unstructured region two on RhoGEF 6 and 7
 pf:RhodaneseRhodanese-like domain
 pf:SAM_DrpA
 pf:SBD_N
 pf:SGSH_C
 pf:SH3_1SH3 domain
 pf:SH3_2Variant SH3 domain
 pf:SH3_9Variant SH3 domain
 pf:Sec3-PIP2_bindExocyst complex component SEC3 N-terminal PIP2 binding PH
 pf:SelAL-seryl-tRNA selenium transferase
 pf:Shikimate_DHShikimate / quinate 5-dehydrogenase
 pf:Sigma70_ECFECF sigma factor
 pf:Sigma70_r4Sigma-70, region 4
 pf:Sigma70_r4_2Sigma-70, region 4
 pf:SulfataseSulfatase
 pf:T2SSKType II secretion system (T2SS), protein K
 pf:TIRTIR domain
 pf:TIR_2TIR domain
 pf:TPP_enzyme_CThiamine pyrophosphate enzyme, C-terminal TPP binding domain
 pf:TPP_enzyme_MThiamine pyrophosphate enzyme, central domain
 pf:TPP_enzyme_NThiamine pyrophosphate enzyme, N-terminal TPP binding domain
 pf:TonB_dep_RecTonB dependent receptor
 pf:TransglyTransglycosylase
 pf:TranspeptidasePenicillin binding protein transpeptidase domain
 pf:UBA_3Fungal ubiquitin-associated domain
 pf:UPF0270Uncharacterised protein family (UPF0270)
 pf:Xre-like-HTH
 pf:YdaS_toxin
 pf:YfeC-like
 pf:YgjP-like

aba:Acid345_0208 pf:Glyco_hydro_36C

abac:LuPra_02120 pf:Peptidase_M56

actl:L3i22_103480 pf:ALF pf:ALF pf:ALF

adin:H7849_05075 pf:ALTTAQ_rpt


alf:CFBP5473_14950 pf:SelA pf:Cys_Met_Meta_PP pf:Aminotran_5 pf:DegT_DnrJ_EryC1 pf:SBD_N pf:Beta_elim_lyase

aoq:129246818 pf:SH3_1 pf:SH3_9 pf:SH3_2 pf:RhoGEF pf:PH pf:RhoGEF67_u2 pf:CD4-extracel

apan:127248538 pf:PsbP pf:PsbP_C

aqa:D1815_01870 pf:Glycophorin_A pf:Peptidase_M56 pf:BibA_N pf:IF2_N

aqb:D1818_05725 pf:Peptidase_M56 pf:Glycophorin_A pf:Brr6_like_C_C pf:BibA_N

aqd:D1816_01095 pf:Peptidase_M56 pf:DUF575

aswu:HUW51_15265 pf:Peptidase_M56 pf:UBA_3

avm:JQX13_11915 pf:DUF2460

bgv:CAL12_05335 pf:PATR pf:PATR pf:PATR pf:AC_1 pf:Autotransporter

blq:L21SP5_01797 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:ATPase_2 pf:AAA_27 pf:AAA_29 pf:MutS_V


cfus:CYFUS_005762 pf:HHH_5

chyd:H4K34_11920 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:AAA_29 pf:ATPase_2 pf:AAA_22 pf:AAA_14 pf:MutS_V

cjo:107325701 pf:LIM


emc:129336024 pf:CH pf:GAS2

fbc:FB2170_11556 pf:Molybdop_Fe4S4 pf:Molybdopterin pf:Molydop_binding

ffl:HYN86_13790 pf:Peptidase_M56

fjg:BB050_00887 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:ATPase_2 pf:AAA_29 pf:MutS_V

fjo:Fjoh_3210 pf:Peptidase_M56

fmg:HYN48_01680 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:ATPase_2 pf:AAA_29 pf:AAA_23 pf:MutS_V

fok:KK2020170_03140 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:ATPase_2 pf:AAA_23 pf:AAA_29 pf:AAA_14 pf:MutS_V

fpal:HYN49_01740 pf:MutS_I pf:MutS_II pf:MutS_III pf:RecA_C pf:MutS_IV pf:4HB_MCP_1 pf:ATPase_2 pf:AAA_23 pf:AAA_29 pf:MutS_V

fpc:FPSM_00431 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:UPF0270 pf:DUF621 pf:ATPase_2 pf:AAA_29 pf:AAA_23 pf:MutS_V

fpk:IA06_01915 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:UPF0270 pf:DUF621 pf:ATPase_2 pf:AAA_29 pf:AAA_23 pf:MutS_V

fpq:IB65_01850 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:UPF0270 pf:DUF621 pf:ATPase_2 pf:AAA_29 pf:AAA_23 pf:MutS_V

fps:FP0395 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:UPF0270 pf:DUF621 pf:ATPase_2 pf:AAA_29 pf:AAA_23 pf:MutS_V

fpv:IA03_01935 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:UPF0270 pf:DUF621 pf:ATPase_2 pf:AAA_29 pf:AAA_23 pf:MutS_V

fpw:IA04_01875 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:UPF0270 pf:DUF621 pf:ATPase_2 pf:AAA_29 pf:AAA_23 pf:MutS_V

fpy:FPG101_02165 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:UPF0270 pf:DUF621 pf:ATPase_2 pf:AAA_29 pf:AAA_23 pf:MutS_V


grw:FTO74_09980 pf:Peptidase_M56 pf:YgjP-like pf:Peptidase_M48

hbi:HBZC1_08300 pf:HMA pf:E1-E2_ATPase pf:Hydrolase pf:Hydrolase_6 pf:HAD pf:HAD_2 pf:Hydrolase_3

hhy:Halhy_2231 pf:Peptidase_M56 pf:Peptidase_M48

hpk:Hprae_1555 pf:CoA_trans pf:AcetylCoA_hyd_C

kbs:EPA93_08510 pf:HTH_ParB


lsv:111888957 pf:TIR pf:TIR_2 pf:NB-ARC pf:AAA_16 pf:DO-GTPase2 pf:AAA_22 pf:NACHT pf:AAA pf:LRR_8 pf:LRR_4

lub:TBR22_A16750 pf:Peptidase_M56 pf:FAP

marx:INR76_02340 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:ATPase_2 pf:AAA_23 pf:AAA_29 pf:AAA_14 pf:MutS_V


mfu:LILAB_07800 pf:Ion_trans_2 pf:Rhabdo_M1 pf:LYTB

mgin:FRZ54_14280 pf:Poly_A_pol_cat

mgk:FSB76_25760 pf:Peptidase_M56

mgot:MgSA37_03510 pf:Peptidase_M56

mio:AOA12_23540 pf:Sigma70_ECF pf:HTH_Tnp_ISL3 pf:HTH_Tnp_1 pf:Xre-like-HTH pf:HTH_AsnC-type pf:HTH_26 pf:HTH_DeoR pf:HTH_23 pf:HTH_31 pf:HTH_59 pf:DUF746 pf:HTH_11 pf:HTH_17 pf:HTH_28 pf:HTH_29 pf:Sigma70_r4_2 pf:MerR pf:LZ_Tnp_IS481 pf:MerR_1 pf:HTH_1 pf:HTH_50 pf:GerE pf:YfeC-like pf:Sigma70_r4 pf:HTH_3 pf:YdaS_toxin pf:HTH_36

mmas:MYMAC_000197 pf:Ion_trans_2 pf:Rhabdo_M1 pf:LYTB

mmax:LCQ47_03725 pf:Erf4

mrub:DEO27_023955 pf:Peptidase_M56


muc:MuYL_1817 pf:Peptidase_M56

mxa:MXAN_0188 pf:RXLR pf:Kre9_KNH

mym:A176_006810 pf:ACC_epsilon

myx:QEG98_01050 pf:Kre9_KNH pf:Phage_TAC_7

ncb:C0V82_15720 pf:Plug pf:TonB_dep_Rec

ngl:RG1141_CH34060 pf:SelA pf:Peripla_BP_6 pf:Aminotran_5 pf:DegT_DnrJ_EryC1 pf:Cys_Met_Meta_PP pf:Beta_elim_lyase

orp:MOP44_25560 pf:FGF

pbiv:QP022_03055 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:ATPase_2 pf:AAA_29 pf:MutS_V

pfer:IRI77_16080 pf:Sec3-PIP2_bind

pge:LG71_22340 pf:Aminotran_3

pgs:CPT03_02940 pf:Sulfatase pf:Phosphodiest pf:SGSH_C pf:PA14

phl:KKY_3719 pf:5_3_exonuc_N pf:NYN_YacP pf:5_3_exonuc pf:HHH_2 pf:DNA_pol_A_exo1 pf:DNA_pol_A

poa:CW731_10710 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:ATPase_2 pf:AAA_22 pf:AAA_29 pf:AAA_23 pf:AAA_14 pf:MutS_V

pro:HMPREF0669_01036 pf:MutS_I pf:MutS_II pf:MutS_III pf:MutS_IV pf:ATPase_2 pf:AAA_27 pf:AAA_29 pf:MutS_V

proe:H9L23_21845 pf:Peptidase_M56 pf:CPSF100_C

pseg:D3H65_15615 pf:Peptidase_M56

pti:PHATRDRAFT_54355 pf:TPP_enzyme_N pf:POR_N pf:TPP_enzyme_M pf:TPP_enzyme_C

raw:NE851_04020 pf:SelA pf:Aminotran_5 pf:DegT_DnrJ_EryC1 pf:Cys_Met_Meta_PP pf:GDC-P pf:Beta_elim_lyase

ray:107520213 pf:Fascin pf:FRG1 pf:Fascin pf:Fascin pf:FRG1 pf:FGF pf:Fascin

rbs:RHODOSMS8_00762 pf:Transgly pf:PCB_OB pf:Transpeptidase

rel:REMIM1_PD00362 pf:SelA pf:Cys_Met_Meta_PP pf:Aminotran_5 pf:DegT_DnrJ_EryC1 pf:SBD_N pf:GDC-P pf:Beta_elim_lyase

rhoz:GXP67_31880 pf:DUF3626 pf:SAM_DrpA

rlt:Rleg2_5759 pf:SelA pf:Cys_Met_Meta_PP pf:Aminotran_5 pf:DegT_DnrJ_EryC1 pf:GDC-P pf:Beta_elim_lyase

rmg:Rhom172_0544 pf:Lipase_GDSL pf:Lipase_GDSL_2

sgi:SGRAN_0854 pf:Peptidase_C32






spho:C3E99_00660 pf:Peptidase_C32





ssin:G7078_06715 pf:Peptidase_M56 pf:Peptidase_M48


sur:STAUR_1204 pf:Peptidase_M56 pf:Peptidase_M48 pf:HTH_3 pf:Ad_Cy_reg

sus:Acid_6349 pf:Nif11


trs:Terro_2867 pf:Chi-conotoxin


ttr:Tter_1884 pf:GatB_Yqey pf:T2SSK pf:Arg_decarbox_C

vgo:GJW-30_1_01802 pf:5_3_exonuc_N pf:5_3_exonuc pf:HHH_5 pf:DNA_pol_A_exo1 pf:DNA_pol_A

xla:108716862 pf:DUF5609 pf:Rhodanese pf:ErmC

xtr:100486879 pf:Shikimate_DH pf:DUF5609 pf:Rhodanese