Search common motifs in selected sequences


  
Motifs : pf:23S_rRNA_IVP23S rRNA-intervening sequence protein
 pf:AAA_33AAA domain
 pf:ASL_CAdenylosuccinate lyase C-terminal
 pf:ASL_C2Argininosuccinate lyase C-terminal
 pf:ATPaseInh_sub_z
 pf:Acetyltransf_10Acetyltransferase (GNAT) domain
 pf:Acetyltransf_8Acetyltransferase (GNAT) domain
 pf:Ada3Histone acetyltransferases subunit 3
 pf:AfaDEnterobacteria AfaD invasin protein
 pf:Alpha_Helical
 pf:ArgoNN-terminal domain of argonaute
 pf:BioW6-carboxyhexanoate--CoA ligase
 pf:CRISPR_Cas6_N
 pf:CbiCPrecorrin-8X methylmutase
 pf:CsgA
 pf:Cytochrom_B562Cytochrome b562
 pf:DUF2460Conserved hypothetical protein 2217 (DUF2460)
 pf:DUF2854Protein of unknown function (DUF2854)
 pf:DUF3306Protein of unknown function (DUF3306)
 pf:DUF3666Ribose-5-phosphate isomerase
 pf:DUF3742Protein of unknown function (DUF3742)
 pf:DUF4030Protein of unknown function (DUF4030)
 pf:DUF4136Domain of unknown function (DUF4136)
 pf:DUF421Protein of unknown function (DUF421)
 pf:DUF4423_like
 pf:DUF4570Domain of unknown function (DUF4570)
 pf:DUF4853Domain of unknown function (DUF4853)
 pf:DUF494Protein of unknown function (DUF494)
 pf:DUF5636
 pf:DUF5677
 pf:DUF5937
 pf:DUF6074
 pf:DUF615Protein of unknown function (DUF615)
 pf:DUF6395
 pf:DUF6471
 pf:DbpADbpA RNA binding domain
 pf:DnaB_2Replication initiation and membrane attachment
 pf:EH_SignatureEH_Signature domain
 pf:E_motif
 pf:EcoEI_R_CEcoEI R protein C-terminal
 pf:FAM219AProtein family FAM219A
 pf:FIVARUncharacterised Sugar-binding Domain
 pf:FPLUncharacterised conserved protein
 pf:FTCDFormiminotransferase domain
 pf:FakA-like_C
 pf:FapA_N
 pf:Fe-ADH_2Iron-containing alcohol dehydrogenase
 pf:Flavi_MFlavivirus envelope glycoprotein M
 pf:FliHFlagellar assembly protein FliH
 pf:Fucose_iso_N2L-fucose isomerase, second N-terminal domain
 pf:G6PD_NGlucose-6-phosphate dehydrogenase, NAD binding domain
 pf:GIDA_C_1st
 pf:Gag_p30Gag P30 core shell protein
 pf:Glyco_transf_4Glycosyltransferase Family 4
 pf:HEAT_2HEAT repeats
 pf:HNF-1_NHepatocyte nuclear factor 1 (HNF-1), N terminus
 pf:HTH_12Ribonuclease R winged-helix domain
 pf:HTH_21HTH-like domain
 pf:HTH_27Winged helix DNA-binding domain
 pf:HTH_32Homeodomain-like domain
 pf:HTH_CodYCodY helix-turn-helix domain
 pf:HTH_Tnp_1_2Helix-turn-helix of insertion element transposase
 pf:HetE-N
 pf:HxlRHxlR-like helix-turn-helix
 pf:IF2_NTranslation initiation factor IF-2, N-terminal region
 pf:KaiA_N
 pf:KfrA_NPlasmid replication region DNA-binding N-term
 pf:LEA_1Late embryogenesis abundant (LEA) group 1
 pf:LEA_3Late embryogenesis abundant protein
 pf:Lin1244_N
 pf:Lipoprotein_LtpHost cell surface-exposed lipoprotein
 pf:MCM_C
 pf:MarR_2MarR family
 pf:Med9RNA polymerase II transcription mediator complex subunit 9
 pf:MmeI_Mtase
 pf:NDUF_B8NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)
 pf:Ndc80_HECHEC/Ndc80p family
 pf:Nif11Nitrogen fixation protein of unknown function
 pf:NifTNifT/FixU protein
 pf:PDDEXK_6PDDEXK-like family of unknown function
 pf:PG_binding_2Putative peptidoglycan binding domain
 pf:POTRASurface antigen variable number repeat
 pf:POTRA_TamA_1
 pf:PRODH
 pf:PSD2Protein of unknown function (DUF1585)
 pf:PaaXPaaX-like protein
 pf:Penicillinase_RPenicillinase repressor
 pf:Peptidase_C9Peptidase family C9
 pf:Pex14_NPeroxisomal membrane anchor protein (Pex14p) conserved region
 pf:PhasinPoly(hydroxyalcanoate) granule associated protein (phasin)
 pf:QSregVFPutative quorum-sensing-regulated virulence factor
 pf:RAP80_UIM
 pf:RHH_6Ribbon-helix-helix domain
 pf:Radial_spoke_3Radial spoke protein 3
 pf:RecXRecX family
 pf:Rep_fac_CReplication factor C C-terminal domain
 pf:RsgA_GTPase
 pf:SHOCTShort C-terminal domain
 pf:SMC_ScpBSegregation and condensation complex subunit ScpB
 pf:SMN_G2-BD
 pf:SPAMSalmonella surface presentation of antigen gene type M protein
 pf:SP_0191-like
 pf:SWIRMSWIRM domain
 pf:SelB-wing_2Elongation factor SelB, winged helix
 pf:Sf6_terminase
 pf:Snf7Snf7
 pf:Swi5Swi5
 pf:TBPIPTat binding protein 1(TBP-1)-interacting protein (TBPIP)
 pf:TC1Thyroid cancer protein 1
 pf:Trigger_NBacterial trigger factor protein (TF)
 pf:TrmBSugar-specific transcriptional regulator TrmB
 pf:USP8_interactUSP8 interacting
 pf:VIT1VIT family
 pf:WIYLDUbiquitin-binding WIYLD domain
 pf:YqeYYqey-like protein
 pf:YtzHYtzH-like protein
 pf:cwf21cwf21 domain
 pf:tRNA_NucTran2_2tRNA nucleotidyltransferase domain 2 putative

abao:BEQ56_11370 pf:Lipoprotein_Ltp pf:DUF494 pf:RecX pf:WIYLD pf:DUF6074

amur:ADH66_18555 pf:RecX

atm:ANT_16110 pf:RecX pf:HTH_32

baco:OXB_0248 pf:RecX pf:ArgoN pf:POTRA pf:RecX

bbor:RFB14_11610 pf:RecX pf:RecX

bgy:BGLY_0897 pf:RecX pf:MmeI_Mtase pf:DUF3666 pf:DUF4136 pf:FapA_N pf:POTRA pf:DnaB_2 pf:DUF494 pf:RecX

bld:BLi00877 pf:RecX pf:DUF4136 pf:FapA_N pf:RecX

blh:BaLi_c09800 pf:RecX pf:DUF4136 pf:FapA_N pf:RecX

bli:BL03032 pf:RecX pf:DUF4136 pf:FapA_N pf:RecX

bliq:INP51_03650 pf:HTH_Tnp_1_2 pf:YqeY pf:DUF494 pf:DnaB_2 pf:RecX

bmur:ABE28_003600 pf:FPL pf:RecX pf:RecX

bsj:UP17_03765 pf:RecX pf:RecX

cag:Cagg_1746 pf:RecX pf:EcoEI_R_C pf:RecX pf:DUF6471

cap:CLDAP_16260 pf:Glyco_transf_4 pf:RecX pf:DUF615

carc:NY10_761 pf:RecX pf:RecX

casp:NQ535_23530 pf:RecX

cau:Caur_1124 pf:RecX pf:TBPIP pf:VIT1 pf:RecX

cazo:G3A45_12305 pf:cwf21 pf:RecX pf:RsgA_GTPase pf:Fucose_iso_N2 pf:Rep_fac_C

ccel:CCDG5_0214 pf:TC1 pf:HEAT_2 pf:WIYLD pf:RecX

ccot:CCAX7_12730 pf:cwf21 pf:RecX pf:AAA_33 pf:VIT1 pf:Pex14_N

cfem:HCR03_10615 pf:RecX pf:E_motif

chl:Chy400_1231 pf:RecX pf:TBPIP pf:VIT1 pf:RecX

chyl:CE91St63_16300 pf:DUF494 pf:cwf21 pf:RecX pf:DbpA

cmic:caldi_15890 pf:Penicillinase_R pf:HTH_27 pf:MarR_2 pf:DUF6471 pf:SelB-wing_2 pf:PaaX pf:LEA_3 pf:DUF494 pf:Glyco_transf_4 pf:RecX pf:EH_Signature

cmiu:B1H56_05320 pf:cwf21 pf:RecX pf:DUF494

cprf:K7H06_01580 pf:SWIRM pf:tRNA_NucTran2_2 pf:Swi5 pf:RecX pf:Fucose_iso_N2

cras:KVH43_07770 pf:SWIRM pf:tRNA_NucTran2_2 pf:Swi5 pf:GIDA_C_1st pf:RecX pf:Fucose_iso_N2

crs:FQB35_12130 pf:tRNA_NucTran2_2 pf:RecX

dph:EHF33_08430 pf:NDUF_B8 pf:RecX

drm:Dred_1832 pf:FTCD pf:Acetyltransf_10 pf:RecX pf:PRODH

eac:EAL2_c15230 pf:HetE-N pf:Radial_spoke_3 pf:RecX

geg:LK443_00570 pf:Med9 pf:FIVAR pf:Lin1244_N pf:MCM_C pf:TrmB pf:HxlR pf:RecX pf:KaiA_N pf:RecX pf:YtzH

gly:K3N28_14470 pf:RecX pf:DUF2460

hbs:IPV69_07495 pf:Sf6_terminase pf:Acetyltransf_8 pf:Penicillinase_R pf:RecX

hhl:Halha_1605 pf:RecX pf:DUF494 pf:RecX

hyi:K2M58_04235 pf:RecX pf:SPAM pf:DUF6074 pf:Cytochrom_B562

jeh:EJN90_10130 pf:RecX pf:DUF494 pf:RecX

kpar:JL105_07160 pf:SMC_ScpB pf:ASL_C pf:DUF494 pf:IF2_N pf:RecX

kur:ASO14_474 pf:DUF494 pf:RecX pf:FliH pf:Ndc80_HEC pf:RecX

kzo:NCTC404_01343 pf:CRISPR_Cas6_N pf:RecX pf:FliH pf:RecX

lgy:T479_20405 pf:RecX pf:FliH pf:RecX

llb:R6U77_09040 pf:RecX pf:Nif11 pf:Gag_p30 pf:Alpha_Helical pf:RecX

lyg:C1N55_17175 pf:DUF494 pf:RecX pf:HTH_CodY pf:QSregVF pf:RecX

lyz:DCE79_15855 pf:RecX pf:DUF2854 pf:USP8_interact pf:RecX

nmes:H9L09_17465 pf:EH_Signature pf:RecX

nps:KRR39_05175 pf:DUF5937 pf:RecX

paek:D3873_10360 pf:Phasin pf:RecX pf:QSregVF pf:RecX

pana:BBH88_16280 pf:ATPaseInh_sub_z pf:DUF4853 pf:RecX pf:RecX

pbut:DTO10_15120 pf:NifT pf:RecX pf:CbiC pf:DUF5636 pf:HTH_12 pf:DUF494 pf:RecX

pcor:KS4_04910 pf:RecX

pdec:H1Q58_04935 pf:ATPaseInh_sub_z pf:DUF4853 pf:PG_binding_2 pf:RecX pf:RecX

pdg:BCM40_11670 pf:ATPaseInh_sub_z pf:Trigger_N pf:RecX pf:RecX

pfae:AJGP001_04890 pf:ATPaseInh_sub_z pf:RecX pf:RecX

pfri:L8956_03815 pf:FPL pf:RecX pf:CbiC pf:DUF494 pf:RecX

phc:BBI08_00350 pf:ATPaseInh_sub_z pf:RecX pf:RecX

pkp:SK3146_06710 pf:RecX

pku:AUO94_12310 pf:ATPaseInh_sub_z pf:RecX pf:RecX

pll:I858_003150 pf:ATPaseInh_sub_z pf:RecX pf:RecX

pln:Plano_0795 pf:ATPaseInh_sub_z pf:RecX pf:RecX

pmar:B0X71_04790 pf:ASL_C2 pf:RecX pf:RecX

pmat:BBI11_05775 pf:ATPaseInh_sub_z pf:DUF4853 pf:PG_binding_2 pf:RecX pf:RecX

pmet:G4Y79_10850 pf:SMN_G2-BD pf:DUF4423_like pf:RecX

pmq:PM3016_5077 pf:AfaD pf:RecX pf:SP_0191-like pf:Pex14_N pf:LEA_1 pf:HNF-1_N

pms:KNP414_05736 pf:AfaD pf:RecX pf:SP_0191-like pf:Pex14_N pf:LEA_1 pf:HNF-1_N

pmw:B2K_26305 pf:AfaD pf:RecX pf:SP_0191-like pf:Pex14_N pf:LEA_1 pf:HNF-1_N

pnp:IJ22_13360 pf:RecX pf:BioW pf:DUF5677 pf:DUF421 pf:DUF6471

ppla:BBI15_00590 pf:ATPaseInh_sub_z pf:DUF4853 pf:PG_binding_2 pf:RecX pf:RecX

prt:AUC31_05155 pf:ATPaseInh_sub_z pf:DUF4853 pf:Trigger_N pf:PG_binding_2 pf:RecX pf:RecX

rbar:AWN76_016730 pf:23S_rRNA_IVP pf:DUF494 pf:SelB-wing_2 pf:RecX

rgn:RGna_04780 pf:DUF4570 pf:RecX

rlo:GQ464_013445 pf:DUF3742 pf:RecX pf:GIDA_C_1st

rmar:GBA65_10710 pf:DUF494 pf:RecX pf:PDDEXK_6

rmf:D5E69_07370 pf:RecX pf:RHH_6 pf:FakA-like_C pf:POTRA pf:Rep_fac_C pf:RecX

rmg:Rhom172_2222 pf:KfrA_N pf:MarR_2 pf:DUF6074 pf:RecX

rmr:Rmar_0661 pf:KfrA_N pf:MarR_2 pf:DUF6074 pf:RecX

rrd:RradSPS_1429 pf:CsgA pf:RecX

rst:ATY39_11060 pf:RecX pf:USP8_interact pf:Alpha_Helical pf:RecX

rub:GBA63_10315 pf:RecX pf:SHOCT

ruk:A4V00_09905 pf:RecX

rxy:Rxyl_1424 pf:RecX pf:HTH_21

scl:sce0207 pf:RecX pf:DUF3306

scu:SCE1572_01895 pf:RecX pf:DUF3306

sob:CSE16_18535 pf:RecX pf:USP8_interact pf:RecX

spae:E2C16_00425 pf:PG_binding_2 pf:RecX pf:Fe-ADH_2 pf:RAP80_UIM pf:RecX pf:FAM219A

spop:SporoP37_05785 pf:RecX pf:QSregVF pf:Snf7 pf:DUF4030 pf:DUF6471 pf:RecX

spor:SporoP33_05295 pf:RecX pf:QSregVF pf:Snf7 pf:DUF4030 pf:DUF6471 pf:RecX

spos:DV702_09490 pf:RecX pf:DUF6395 pf:DUF6471 pf:RecX

spsy:AZE41_03650 pf:RecX pf:RecX

srm:SRM_02357 pf:RecX

sru:SRU_2134 pf:RecX

sti:Sthe_1432 pf:VIT1 pf:DUF6074 pf:RecX

sure:SporoP32a_05805 pf:RecX pf:Snf7 pf:DUF4030 pf:DUF6471 pf:RecX

svj:NQ490_03895 pf:Lipoprotein_Ltp pf:RecX pf:PSD2

talu:JDY09_05135 pf:RecX

thug:KNN16_13290 pf:RecX pf:TBPIP pf:RecX pf:DUF6074

tiz:RBU61_09515 pf:RecX

tmel:NOG13_07345 pf:RecX

tro:trd_1238 pf:POTRA_TamA_1 pf:DUF3742 pf:RecX pf:Ada3

ttr:Tter_0073 pf:Peptidase_C9 pf:DUF494 pf:RecX

tvu:AB849_010580 pf:Flavi_M pf:G6PD_N pf:RecX

vin:AKJ08_0603 pf:RecX