Search common motifs in selected sequences
Motifs :
pf:5_3_exonuc
(7)
5'-3' exonuclease, C-terminal SAM fold
pf:6PF2K
(1)
6-phosphofructo-2-kinase
pf:AAA
(101)
ATPase family associated with various cellular activities (AAA)
pf:AAA_11
(202)
AAA domain
pf:AAA_12
(22)
AAA domain
pf:AAA_14
(16)
AAA domain
pf:AAA_15
(2)
AAA ATPase domain
pf:AAA_16
(99)
AAA ATPase domain
pf:AAA_17
(5)
AAA domain
pf:AAA_18
(5)
AAA domain
pf:AAA_19
(101)
AAA domain
pf:AAA_22
(101)
AAA domain
pf:AAA_23
(29)
AAA domain
pf:AAA_24
(36)
AAA domain
pf:AAA_28
(101)
AAA domain
pf:AAA_29
(67)
P-loop containing region of AAA domain
pf:AAA_30
(101)
AAA domain
pf:AAA_5
(46)
AAA domain (dynein-related subfamily)
pf:AAA_7
(20)
P-loop containing dynein motor region D3
pf:ABC_ATPase
(7)
Predicted ATPase of the ABC class
pf:ABC_tran
(75)
ABC transporter
pf:ATP-synt_ab
(4)
ATP synthase alpha/beta family, nucleotide-binding domain
pf:ATP_bind_1
(9)
Conserved hypothetical ATP binding protein
pf:ATPase_2
(27)
ATPase domain predominantly from Archaea
pf:Apocytochr_F_C
(1)
Apocytochrome F, C-terminal
pf:CHU_C
(1)
C-terminal domain of CHU protein family
pf:CbiA
(21)
CobQ/CobB/MinD/ParA nucleotide binding domain
pf:CesT
(2)
Tir chaperone protein (CesT) family
pf:Cro
(1)
Cro
pf:DAO_C
(1)
C-terminal domain of alpha-glycerophosphate oxidase
pf:DAP3
(5)
Mitochondrial ribosomal death-associated protein 3
pf:DEAD
(55)
DEAD/DEAH box helicase
pf:DNA_pol_lambd_f
(14)
Fingers domain of DNA polymerase lambda
pf:DO-GTPase2
(1)
pf:DUF1002
(1)
Protein of unknown function (DUF1002)
pf:DUF2442
(2)
Protein of unknown function (DUF2442)
pf:DUF3489
(1)
Protein of unknown function (DUF3489)
pf:DUF4444
(1)
Domain of unknown function (DUF4444)
pf:DUF4828
(3)
Domain of unknown function (DUF4828)
pf:DUF5682
(1)
pf:DUF5720
(1)
pf:DUF6763
(2)
pf:DUF815
(3)
Protein of unknown function (DUF815)
pf:Flavi_DEAD
(1)
Flavivirus DEAD domain
pf:FtsK_SpoIIIE
(39)
FtsK/SpoIIIE family
pf:GatF
(1)
pf:Gp18_dom_I
(1)
pf:HHH
(28)
Helix-hairpin-helix motif
pf:HHH_2
(90)
Helix-hairpin-helix motif
pf:HHH_3
(15)
Helix-hairpin-helix motif
pf:HHH_4
(202)
Helix-hairpin-helix containing domain
pf:HHH_5
(116)
Helix-hairpin-helix domain
pf:HHH_6
(2)
Helix-hairpin-helix motif
pf:HHH_8
(1)
Helix-hairpin-helix domain
pf:HI0933_like
(1)
HI0933-like protein
pf:HRDC
(2)
HRDC domain
pf:HTH_12
(1)
Ribonuclease R winged-helix domain
pf:HTH_30
(1)
PucR C-terminal helix-turn-helix domain
pf:HU-HIG
(1)
pf:Helicase_RecD
(101)
Helicase
pf:HerA_C
(27)
pf:Herpes_Helicase
(20)
Helicase
pf:IIGP
(1)
Interferon-inducible GTPase (IIGP)
pf:IMS_HHH
(1)
IMS family HHH motif
pf:IstB_IS21
(3)
IstB-like ATP binding protein
pf:KAP_NTPase
(18)
KAP family P-loop domain
pf:KRR1-like_KH2
(1)
pf:KTI12
(29)
Chromatin associated protein KTI12
pf:LAGLIDADG_3
(1)
LAGLIDADG-like domain
pf:LlgE_F_G_D1
(3)
pf:Lysine_decarbox
(1)
Possible lysine decarboxylase
pf:MMR_HSR1
(2)
50S ribosome-binding GTPase
pf:MeaB
(65)
pf:Mg_chelatase
(11)
Magnesium chelatase, subunit ChlI
pf:MobB
(30)
Molybdopterin guanine dinucleotide synthesis protein B
pf:MutL_C
(1)
MutL C terminal dimerisation domain
pf:NACHT
(4)
NACHT domain
pf:NB-ARC
(4)
NB-ARC domain
pf:NTPase_1
(99)
NTPase
pf:ORF6C
(1)
ORF6C domain
pf:Ole_e_6
(2)
pf:P-loop_TraG
(3)
pf:PIF1
(101)
PIF1-like helicase
pf:PPV_E1_C
(1)
Papillomavirus helicase
pf:PRK
(1)
Phosphoribulokinase / Uridine kinase family
pf:PhoH
(48)
PhoH-like protein
pf:RNA_helicase
(6)
RNA helicase
pf:RNA_pol_A_CTD
(2)
Bacterial RNA polymerase, alpha chain C terminal domain
pf:RPA
(1)
Replication initiator protein A
pf:Rad17
(22)
Rad17 cell cycle checkpoint protein
pf:RecR_HhH
(2)
pf:Reovirus_L2_6th
(1)
pf:Rep3_N
(5)
pf:ResIII
(21)
Type III restriction enzyme, res subunit
pf:Ribosomal_S13
(12)
Ribosomal protein S13/S18
pf:RsgA_GTPase
(73)
pf:SH3_10
(1)
pf:SH3_13
(101)
pf:SKI
(2)
Shikimate kinase
pf:SLFN-g3_helicase
(91)
pf:SMC_N
(3)
RecF/RecN/SMC N terminal domain
pf:SOGP_N
(4)
pf:SRP54
(79)
SRP54-type protein, GTPase domain
pf:STPRs
(1)
pf:S_100
(1)
S-100/ICaBP type calcium binding domain
pf:Sacchrp_dh_NADP
(10)
Saccharopine dehydrogenase NADP binding domain
pf:T2SSE
(101)
Type II/IV secretion system protein
pf:TFA2_Winged_2
(1)
pf:TFIIE_alpha
(1)
TFIIE alpha subunit
pf:TRI-like_N
(6)
pf:TetR_C_34
(1)
pf:Thymidylate_kin
(20)
Thymidylate kinase
pf:TraI_hel_assoc_N
(16)
pf:TrwB_AAD_bind
(61)
Type IV secretion-system coupling protein DNA-binding domain
pf:TsaE
(24)
Threonylcarbamoyl adenosine biosynthesis protein TsaE
pf:UPF0758_N
(1)
pf:UvrD-helicase
(101)
UvrD/REP helicase N-terminal domain
pf:UvrD_C
(96)
UvrD-like helicase C-terminal domain
pf:UvrD_C_2
(100)
UvrD-like helicase C-terminal domain
pf:VIT1
(2)
VIT family
pf:Viral_helicase1
(201)
Viral (Superfamily 1) RNA helicase
pf:Zeta_toxin
(24)
Zeta toxin
pf:adh_short
(1)
short chain dehydrogenase
pf:bpMoxR
(10)
pf:cobW
(38)
CobW/HypB/UreG, nucleotide-binding domain
pf:nSTAND3
(101)