Search common motifs in selected sequences


  
Motifs : pf:Arg_repressorArginine repressor, DNA binding domain
 pf:BrkDBDBrinker DNA-binding domain
 pf:CENP-B_NCENP-B N-terminal DNA-binding domain
 pf:CLIP1_ZNFCLIP1 zinc knuckle
 pf:DDE_1DDE superfamily endonuclease
 pf:DDE_3DDE superfamily endonuclease
 pf:DDE_Tnp_ISAZ013Rhodopirellula transposase DDE domain
 pf:DUF1153Protein of unknown function (DUF1153)
 pf:DUF1804Protein of unknown function (DUF1804)
 pf:DUF658Protein of unknown function (DUF658)
 pf:DUF6873
 pf:Esterase_PHB
 pf:FeoCFeoC like transcriptional regulator
 pf:GNAT_acetyltranGNAT acetyltransferase
 pf:GerEBacterial regulatory proteins, luxR family
 pf:HTH_17Helix-turn-helix domain
 pf:HTH_20Helix-turn-helix domain
 pf:HTH_22HTH domain
 pf:HTH_23Homeodomain-like domain
 pf:HTH_26Cro/C1-type HTH DNA-binding domain
 pf:HTH_28Helix-turn-helix domain
 pf:HTH_29Winged helix-turn helix
 pf:HTH_30PucR C-terminal helix-turn-helix domain
 pf:HTH_32Homeodomain-like domain
 pf:HTH_33Winged helix-turn helix
 pf:HTH_36Helix-turn-helix domain
 pf:HTH_38Helix-turn-helix domain
 pf:HTH_40Helix-turn-helix domain
 pf:HTH_5Bacterial regulatory protein, arsR family
 pf:HTH_59
 pf:HTH_6Helix-turn-helix domain, rpiR family
 pf:HTH_7Helix-turn-helix domain of resolvase
 pf:HTH_8Bacterial regulatory protein, Fis family
 pf:HTH_IclRIclR helix-turn-helix domain
 pf:HTH_PafC
 pf:HTH_Tnp_1Transposase
 pf:HTH_Tnp_1_2Helix-turn-helix of insertion element transposase
 pf:HTH_Tnp_IS630Transposase
 pf:HTH_Tnp_ISL3Helix-turn-helix domain of transposase family ISL3
 pf:HTH_Tnp_Tc3_1Tc3 transposase
 pf:HTH_Tnp_Tc3_2Transposase
 pf:HTH_WhiAWhiA C-terminal HTH domain
 pf:HTH_psqhelix-turn-helix, Psq domain
 pf:HisK_NHistidine kinase N terminal
 pf:HomezHomeodomain leucine-zipper encoding, Homez
 pf:I-TevI_DNA-bd
 pf:KwaB
 pf:LIAS_NN-terminal domain of lipoyl synthase of Radical_SAM family
 pf:MarRMarR family
 pf:MarR_2MarR family
 pf:MdcEMalonate decarboxylase gamma subunit (MdcE)
 pf:MerRMerR family regulatory protein
 pf:PAX'Paired box' domain
 pf:RALGAPB_N
 pf:RT_RNaseH_2
 pf:Rota_NS53Rotavirus RNA-binding Protein 53 (NS53)
 pf:SgrR_NSugar transport-related sRNA regulator N-term
 pf:Sigma70_r4_2Sigma-70, region 4
 pf:SpoIIIDStage III sporulation protein D
 pf:Trp_repressorTrp repressor protein
 pf:UPF0122Putative helix-turn-helix protein, YlxM / p13 like
 pf:YfeC-like
 pf:rveIntegrase core domain

acam:HRE53_05745 pf:HTH_Tnp_IS630 pf:HTH_23 pf:HTH_20 pf:I-TevI_DNA-bd pf:HTH_Tnp_Tc3_2 pf:HTH_33 pf:DDE_3 pf:DDE_Tnp_ISAZ013

aee:IM676_04825 pf:HTH_Tnp_IS630 pf:HTH_23 pf:HTH_28 pf:Sigma70_r4_2 pf:CENP-B_N pf:HTH_8 pf:HTH_29 pf:HTH_33 pf:DDE_3 pf:Esterase_PHB pf:DDE_Tnp_ISAZ013

aff:H3L97_01820 pf:HTH_Tnp_IS630 pf:DUF1804 pf:HTH_Tnp_1 pf:HTH_28 pf:HTH_40 pf:HTH_30 pf:HTH_29 pf:HTH_7 pf:HTH_23 pf:DUF658 pf:HTH_Tnp_1_2 pf:HTH_17 pf:HTH_WhiA pf:HTH_6 pf:DUF6873 pf:FeoC pf:MarR_2 pf:MarR pf:UPF0122 pf:DDE_3 pf:DDE_1 pf:RT_RNaseH_2

amr:AM1_6020 pf:DDE_3 pf:DDE_Tnp_ISAZ013

ckh:LVJ77_07040 pf:DDE_3

cste:H3L98_00165 pf:HTH_Tnp_IS630 pf:DUF1804 pf:HTH_Tnp_1 pf:HTH_Tnp_ISL3 pf:HTH_28 pf:HTH_Tnp_1_2 pf:HTH_30 pf:HTH_8 pf:HTH_29 pf:HTH_23 pf:MerR pf:HTH_7 pf:HTH_17 pf:HTH_psq pf:HTH_22 pf:YfeC-like pf:DDE_3 pf:DDE_1

cyc:PCC7424_5654 pf:HTH_Tnp_IS630 pf:PAX pf:HTH_23 pf:HTH_28 pf:HTH_29 pf:HTH_7 pf:HisK_N pf:KwaB pf:Arg_repressor pf:DDE_3

fcf:FNFX1_1654 pf:DDE_3 pf:DDE_1

fta:FTA_0004 pf:HTH_Tnp_IS630 pf:HTH_23 pf:HTH_28 pf:HTH_40 pf:HTH_29 pf:DDE_3 pf:DDE_1

ftc:DA46_1017 pf:DDE_3 pf:DDE_1

fth:FTH_0100 pf:HTH_Tnp_IS630 pf:HTH_23 pf:HTH_28 pf:HTH_40 pf:HTH_29 pf:DDE_3 pf:DDE_1

ftl:FTL_0018 pf:HTH_Tnp_IS630 pf:HTH_23 pf:HTH_28 pf:HTH_40 pf:HTH_29 pf:DDE_3 pf:DDE_1

fts:F92_00020 pf:DDE_3 pf:DDE_1

ftv:CH67_164 pf:HTH_Tnp_IS630 pf:HTH_23 pf:HTH_28 pf:HTH_40 pf:HTH_29 pf:DDE_3 pf:DDE_1

ftw:FTW_1812 pf:HTH_Tnp_IS630 pf:HTH_40 pf:HTH_29 pf:HTH_33 pf:DDE_3 pf:DDE_1

ftx:AW25_378 pf:DDE_3 pf:DDE_1

ftz:CH68_102 pf:DDE_3 pf:DDE_1

kki:KKKWG1_0285 pf:DDE_3 pf:RT_RNaseH_2

lba:Lebu_1310 pf:HTH_Tnp_IS630 pf:HTH_36 pf:HTH_33 pf:DDE_3 pf:DDE_1

lbo:LBWT_56660 pf:DDE_3

leo:AMK43_05885 pf:DDE_3 pf:RALGAPB_N pf:DDE_1

lot:AXF11_09525 pf:DDE_3 pf:DDE_1

lsc:KIK02_01445 pf:HTH_Tnp_IS630 pf:HTH_Tnp_1 pf:PAX pf:HTH_23 pf:HTH_29 pf:HTH_28 pf:CENP-B_N pf:HTH_30 pf:HTH_8 pf:HTH_17 pf:HTH_33 pf:DDE_3

lsk:J5X98_02860 pf:PAX pf:HTH_Tnp_IS630 pf:HTH_Tnp_1 pf:HTH_Tnp_ISL3 pf:HTH_23 pf:HTH_28 pf:HTH_29 pf:CENP-B_N pf:HTH_30 pf:HTH_8 pf:HTH_17 pf:HTH_33 pf:DDE_3 pf:DDE_1

lte:JMUB4039_2412 pf:DDE_3 pf:DDE_1

mboi:DQF64_07235 pf:HTH_33 pf:GNAT_acetyltran pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

mcer:MON37_00660 pf:HTH_Tnp_IS630 pf:DUF1804 pf:HTH_Tnp_1 pf:HTH_28 pf:HTH_29 pf:HTH_7 pf:HTH_30 pf:HTH_8 pf:HTH_23 pf:FeoC pf:HTH_PafC pf:MarR pf:DDE_3 pf:DDE_1

mvag:D0A34_00595 pf:HTH_Tnp_IS630 pf:HTH_Tnp_Tc3_1 pf:HTH_28 pf:Sigma70_r4_2 pf:HTH_23 pf:HTH_29 pf:HTH_17 pf:HTH_33 pf:HTH_Tnp_Tc3_2 pf:DDE_3 pf:DDE_Tnp_ISAZ013

naq:D0T90_00840 pf:HTH_Tnp_IS630 pf:HTH_Tnp_1 pf:HTH_23 pf:HTH_28 pf:HTH_29 pf:HTH_30 pf:BrkDBD pf:HTH_8 pf:HTH_7 pf:DDE_3 pf:DDE_1

ncn:BZZ01_09455 pf:DDE_3

ndn:H3L92_00965 pf:HTH_Tnp_IS630 pf:DUF1804 pf:HTH_Tnp_1 pf:PAX pf:HTH_23 pf:HTH_Tnp_ISL3 pf:HTH_28 pf:HTH_29 pf:HTH_17 pf:YfeC-like pf:FeoC pf:HTH_PafC pf:HTH_IclR pf:MarR_2 pf:HTH_5 pf:MarR pf:HTH_20 pf:SgrR_N pf:DDE_3 pf:DDE_1

nek:CGZ77_04300 pf:DDE_3

nel:NELON_00110 pf:Rota_NS53 pf:DDE_3 pf:DDE_1

ngk:NGK_0052 pf:DDE_3

ngo:NGO_00195 pf:DDE_3

nmb:MON40_01940 pf:HTH_Tnp_IS630 pf:DUF1804 pf:HTH_Tnp_1 pf:HTH_28 pf:HTH_29 pf:HTH_7 pf:HTH_30 pf:HTH_8 pf:HTH_23 pf:HTH_17 pf:FeoC pf:HTH_PafC pf:MarR pf:DDE_3 pf:DDE_1

nmd:NMBG2136_1608 pf:Rota_NS53 pf:DDE_3 pf:DDE_1

nmh:NMBH4476_0486 pf:Rota_NS53 pf:DDE_3 pf:DDE_1


nmj:NM96_04280 pf:DDE_3 pf:DDE_1

nmm:NMBM01240149_0452 pf:Rota_NS53 pf:DDE_3 pf:DDE_1

nmn:NMCC_1649 pf:Rota_NS53 pf:DDE_3 pf:DDE_1

nmq:NMBM04240196_0500 pf:Rota_NS53 pf:DDE_3 pf:DDE_1

nms:NMBM01240355_1659 pf:Rota_NS53 pf:DDE_3 pf:DDE_1

nmx:NMA510612_1352 pf:Rota_NS53 pf:DDE_3 pf:DDE_1

nmz:NMBNZ0533_1709 pf:Rota_NS53 pf:DDE_3 pf:DDE_1

npf:LPB400_09405 pf:HTH_Tnp_IS630 pf:HTH_Tnp_1 pf:HTH_28 pf:HTH_29 pf:HTH_7 pf:HTH_30 pf:HTH_8 pf:HTH_23 pf:FeoC pf:DDE_3 pf:DDE_1

nsc:J7445_06220 pf:HTH_Tnp_IS630 pf:DUF1804 pf:HTH_Tnp_1 pf:HTH_28 pf:HTH_29 pf:HTH_7 pf:HTH_30 pf:HTH_8 pf:HTH_23 pf:FeoC pf:HTH_PafC pf:DDE_3 pf:DDE_1

nsf:FAH66_00960 pf:HTH_Tnp_IS630 pf:DUF1804 pf:HTH_Tnp_1 pf:HTH_28 pf:HTH_29 pf:HTH_7 pf:HTH_30 pf:HTH_8 pf:HTH_23 pf:FeoC pf:HTH_PafC pf:DDE_3 pf:DDE_1

nsi:A6J88_04915 pf:Rota_NS53 pf:DDE_3 pf:DDE_1

nwa:Nwat_0414 pf:DDE_3

otd:J1M35_01645 pf:DDE_3

ott:OTT_0854 pf:HTH_Tnp_1 pf:HTH_Tnp_IS630 pf:HTH_28 pf:HTH_23 pf:DUF1804 pf:DDE_3 pf:DDE_1

pcr:Pcryo_1338 pf:HTH_Tnp_IS630 pf:HTH_Tnp_ISL3 pf:HTH_23 pf:HTH_29 pf:HTH_28 pf:GerE pf:HTH_psq pf:SpoIIID pf:HTH_17 pf:MerR pf:HTH_33 pf:DDE_3

pcu:PC_RS10550 pf:DDE_3 pf:DDE_1 pf:Homez

pky:PKHYL_05660 pf:HTH_Tnp_IS630 pf:HTH_Tnp_ISL3 pf:HTH_Tnp_1 pf:Trp_repressor pf:HTH_28 pf:HTH_29 pf:HTH_23 pf:GerE pf:DUF1153 pf:HTH_59 pf:DUF1804 pf:Sigma70_r4_2 pf:HTH_psq pf:HTH_17 pf:HTH_33 pf:DDE_3

pso:PSYCG_07035 pf:HTH_Tnp_IS630 pf:HTH_Tnp_ISL3 pf:HTH_23 pf:HTH_29 pf:HTH_28 pf:GerE pf:HTH_psq pf:SpoIIID pf:HTH_17 pf:MerR pf:HTH_33 pf:DDE_3

rbt:NOVO_02115 pf:DDE_3 pf:DDE_1 pf:Homez

saco:SAME_00793 pf:HTH_Tnp_IS630 pf:HTH_Tnp_ISL3 pf:HTH_28 pf:HTH_29 pf:HTH_30 pf:HTH_23 pf:HTH_Tnp_1_2 pf:HTH_22 pf:HTH_17 pf:HTH_33 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

sjj:SPJ_1396 pf:DDE_3

smen:SAMEA4412692_0024 pf:DDE_3 pf:DDE_1

snb:SP670_0802 pf:DDE_3

snc:HMPREF0837_11729 pf:DDE_3

snd:MYY_1424 pf:DDE_3

snm:SP70585_1534 pf:DDE_3

snt:SPT_1432 pf:DDE_3

snv:SPNINV200_00160 pf:HTH_Tnp_IS630 pf:HTH_Tnp_ISL3 pf:HTH_28 pf:HTH_29 pf:DUF658 pf:HTH_Tnp_1_2 pf:HTH_23 pf:HTH_17 pf:HTH_20 pf:HTH_38 pf:HTH_33 pf:DDE_3 pf:rve pf:DDE_Tnp_ISAZ013 pf:CLIP1_ZNF

sor:SOR_1957 pf:DDE_3 pf:MdcE

spab:KQ224_08465 pf:HTH_Tnp_IS630 pf:DUF1804 pf:HTH_28 pf:Sigma70_r4_2 pf:HTH_29 pf:HTH_23 pf:HTH_psq pf:HTH_17 pf:HTH_PafC pf:HTH_33 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013 pf:LIAS_N

spn:SP_0300 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

spng:HMPREF1038_01479 pf:DDE_3

spp:SPP_1515 pf:DDE_3

spr:spr1827 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013 pf:CLIP1_ZNF

spw:SPCG_1981 pf:DDE_3 pf:DDE_1 pf:CLIP1_ZNF pf:DDE_Tnp_ISAZ013

spx:SPG_1419 pf:DDE_3

spyh:L897_02520 pf:DDE_3 pf:DDE_1

srp:SSUST1_0250 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

ssb:SSUBM407_0819 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

ssf:SSUA7_1440 pf:HTH_Tnp_IS630 pf:HTH_Tnp_ISL3 pf:HTH_28 pf:HTH_29 pf:HTH_30 pf:HTH_Tnp_1_2 pf:HTH_23 pf:HTH_22 pf:HTH_17 pf:FeoC pf:HTH_20 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

ssi:SSU0542 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

ssq:SSUD9_0488 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

sss:SSUSC84_0523 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

sst:SSUST3_0264 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

ssu:SSU05_0584 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

ssui:T15_1372 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

ssus:NJAUSS_0549 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

ssuy:YB51_1295 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

ssv:SSU98_0588 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

ssw:SSGZ1_0579 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

ssy:SLG_10300 pf:DDE_3 pf:DDE_1

std:SPPN_04780 pf:DDE_3

sui:SSUJS14_0702 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

suo:SSU12_0546 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

sup:YYK_01000 pf:DDE_3 pf:DDE_1 pf:DDE_Tnp_ISAZ013

syl:AWQ21_00510 pf:DDE_3 pf:DDE_1

syne:Syn6312_3351 pf:HTH_Tnp_IS630 pf:HTH_23 pf:HTH_28 pf:CENP-B_N pf:HTH_29 pf:HTH_17 pf:DDE_3 pf:DDE_1

ter:Tery_2258 pf:DDE_3

vsu:P3M64_04190 pf:PAX pf:HTH_Tnp_IS630 pf:HTH_Tnp_ISL3 pf:HTH_Tnp_1 pf:HTH_23 pf:HTH_29 pf:HTH_28 pf:HTH_32 pf:HTH_33 pf:DDE_3 pf:rve

wend:M3L71_00715 pf:HTH_Tnp_IS630 pf:HTH_Tnp_1 pf:HTH_23 pf:HTH_28 pf:HTH_29 pf:HTH_7 pf:HTH_40 pf:HTH_Tnp_1_2 pf:HTH_26 pf:CENP-B_N pf:HTH_17 pf:DDE_3

wev:ONI09_04585 pf:HTH_Tnp_IS630 pf:HTH_Tnp_ISL3 pf:HTH_23 pf:HTH_28 pf:HTH_29 pf:CENP-B_N pf:HTH_7 pf:HTH_Tnp_1_2 pf:HTH_33 pf:DDE_3 pf:DDE_Tnp_ISAZ013

wpi:WP0029 pf:DDE_3 pf:DDE_Tnp_ISAZ013