Search common motifs in selected sequences


  
Motifs : pf:CATRA-C
 pf:CENP-B_NCENP-B N-terminal DNA-binding domain
 pf:DUF2551Protein of unknown function (DUF2551)
 pf:DUF473Protein of unknown function (DUF473)
 pf:DUF6471
 pf:HHH_4Helix-hairpin-helix containing domain
 pf:HTH_10HTH DNA binding domain
 pf:HTH_11HTH domain
 pf:HTH_19Helix-turn-helix domain
 pf:HTH_20Helix-turn-helix domain
 pf:HTH_24Winged helix-turn-helix DNA-binding
 pf:HTH_26Cro/C1-type HTH DNA-binding domain
 pf:HTH_28Helix-turn-helix domain
 pf:HTH_3Helix-turn-helix
 pf:HTH_31Helix-turn-helix domain
 pf:HTH_35Winged helix-turn-helix DNA-binding
 pf:HTH_37Helix-turn-helix domain
 pf:HTH_5Bacterial regulatory protein, arsR family
 pf:HTH_MgaM protein trans-acting positive regulator (MGA) HTH domain
 pf:IF2_NTranslation initiation factor IF-2, N-terminal region
 pf:MarRMarR family
 pf:MarR_2MarR family
 pf:PgaDPgaD-like protein
 pf:Phage_CI_reprBacteriophage CI repressor helix-turn-helix domain
 pf:Put_DNA-bind_NPutative DNA-binding protein N-terminus
 pf:Succ_CoA_ligSuccinyl-CoA ligase like flavodoxin domain
 pf:Xre-like-HTH
 pf:YdaS_toxin

afla:FHG64_10515 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_5 pf:HTH_31

amei:LV469_05955 pf:HTH_37 pf:HTH_26 pf:HTH_19 pf:HTH_24 pf:HTH_3 pf:Succ_CoA_lig

apr:Apre_1830 pf:HTH_37 pf:HTH_26 pf:HTH_19 pf:DUF6471 pf:HTH_3 pf:HTH_20 pf:HTH_5

azz:DEW08_15680 pf:HTH_26 pf:HTH_37 pf:CATRA-C pf:Put_DNA-bind_N pf:HTH_19 pf:HTH_10 pf:HTH_31 pf:HTH_3

bcl:ABC0186 pf:HTH_26 pf:HTH_37 pf:HTH_3 pf:HTH_19 pf:HTH_31 pf:Put_DNA-bind_N pf:HTH_10

bros:QUH67_18100 pf:HTH_26 pf:HTH_37 pf:DUF6471 pf:MarR_2 pf:HTH_3 pf:HTH_31 pf:HTH_19 pf:HTH_10 pf:YdaS_toxin

cagg:HYG79_09625 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_3 pf:HTH_31 pf:Xre-like-HTH

cbae:COR50_20475 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_10 pf:HTH_31

chry:CEY12_20865 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_Mga pf:HTH_3 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_31

ckl:CKL_3398 pf:HTH_26 pf:HTH_37 pf:HTH_24 pf:HTH_3 pf:HTH_31 pf:HTH_19 pf:HTH_10 pf:IF2_N

ckr:CKR_3004 pf:HTH_26 pf:HTH_37 pf:HTH_24 pf:HTH_3 pf:HTH_31 pf:HTH_19 pf:HTH_10 pf:IF2_N

clac:EG342_13145 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_Mga pf:HTH_3 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_31

cora:N0B40_09830 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_Mga pf:HTH_3 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_31

cov:EKO29_07840 pf:HTH_26 pf:HTH_37 pf:Put_DNA-bind_N pf:PgaD pf:HTH_19 pf:HTH_10 pf:HTH_3 pf:HTH_31

coy:HF329_28660 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_3 pf:HTH_10 pf:HTH_24 pf:MarR_2 pf:Put_DNA-bind_N pf:HTH_20 pf:HTH_31

csr:Cspa_c20230 pf:HTH_37 pf:HTH_26 pf:HTH_28 pf:HTH_35 pf:HTH_31 pf:HTH_24 pf:HTH_3 pf:HTH_19 pf:HTH_10 pf:HTH_20 pf:IF2_N

dej:AWY79_02650 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:MarR_2 pf:HTH_20 pf:HTH_3 pf:HTH_31 pf:HTH_10 pf:Put_DNA-bind_N pf:YdaS_toxin

dod:DCS32_07370 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_31 pf:Xre-like-HTH pf:HTH_3

een:BBD30_02675 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_Mga pf:HTH_3 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_31

egm:AYC65_12715 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_Mga pf:HTH_3 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_31

ego:BBD34_13450 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_Mga pf:HTH_3 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_31

eliz:JCR23_16300 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_Mga pf:HTH_3 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_31

elz:FCS00_06505 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_Mga pf:HTH_3 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_31

emg:BBD33_16705 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_Mga pf:HTH_3 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_31

emn:M876_02855 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_Mga pf:HTH_3 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_31

eze:KI430_02645 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_10 pf:HTH_31

fpec:Q1W71_22645 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_3 pf:HTH_10 pf:HTH_24 pf:Put_DNA-bind_N pf:MarR_2 pf:HTH_31

glo:Glov_0100 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_10 pf:HTH_31 pf:Put_DNA-bind_N

kdi:Krodi_0925 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_31 pf:Xre-like-HTH pf:HTH_3

lac:LBA1788 pf:HTH_26 pf:HTH_19 pf:HTH_5 pf:HTH_37 pf:HTH_3 pf:HTH_20 pf:HTH_10 pf:HTH_31 pf:HTH_24 pf:Put_DNA-bind_N

lad:LA14_1782 pf:HTH_26 pf:HTH_19 pf:HTH_5 pf:HTH_37 pf:HTH_3 pf:HTH_20 pf:HTH_10 pf:HTH_31 pf:HTH_24 pf:Put_DNA-bind_N

laf:SD55_1786 pf:HTH_26 pf:HTH_19 pf:HTH_5 pf:HTH_37 pf:HTH_3 pf:HTH_20 pf:HTH_10 pf:HTH_31 pf:HTH_24 pf:Put_DNA-bind_N

lai:LAC30SC_09700 pf:HTH_26 pf:HTH_19 pf:HTH_5 pf:HTH_37 pf:HTH_3 pf:HTH_20 pf:HTH_10 pf:HTH_31 pf:HTH_24 pf:Put_DNA-bind_N

lcr:LCRIS_01814 pf:HTH_26 pf:HTH_19 pf:HTH_5 pf:HTH_37 pf:HTH_3 pf:HTH_20 pf:HTH_10 pf:HTH_31 pf:HTH_24 pf:Put_DNA-bind_N

liq:KBW87_07300 pf:HTH_26 pf:HTH_19 pf:HTH_37 pf:HTH_3 pf:HTH_10 pf:HTH_31 pf:Put_DNA-bind_N pf:HTH_24

lke:WANG_1345 pf:HTH_26 pf:HTH_19 pf:HTH_5 pf:HTH_37 pf:HTH_3 pf:HTH_20 pf:HTH_10 pf:HTH_31 pf:HTH_24 pf:Put_DNA-bind_N

lor:AYI71_01455 pf:HTH_26 pf:HTH_37 pf:HTH_20 pf:HTH_19 pf:HTH_3

lpal:LDL79_08080 pf:HTH_37 pf:HTH_26 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_31 pf:DUF2551 pf:Xre-like-HTH

lpon:LP475_00610 pf:HTH_26 pf:HTH_19 pf:HTH_37 pf:HTH_20 pf:HTH_5 pf:HTH_24 pf:HTH_3 pf:HTH_31 pf:MarR_2 pf:HTH_10 pf:Xre-like-HTH pf:YdaS_toxin pf:HHH_4

luu:H4B44_09790 pf:HTH_26 pf:HTH_19 pf:HTH_5 pf:HTH_37 pf:HTH_3 pf:HTH_20 pf:HTH_10 pf:HTH_31 pf:HTH_24 pf:Put_DNA-bind_N

mang:RBH95_02410 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_3 pf:HTH_10 pf:HTH_31

mare:EJ994_15100 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:CENP-B_N pf:HTH_3 pf:HTH_10 pf:HTH_31 pf:Xre-like-HTH

mlio:NYZ99_18330 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_3 pf:HTH_10 pf:HTH_31

mvb:MJO52_13240 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_10 pf:HTH_31 pf:Put_DNA-bind_N

oho:Oweho_3178 pf:HTH_37 pf:HTH_26 pf:HTH_31 pf:HTH_3 pf:HTH_19 pf:HTH_10 pf:Put_DNA-bind_N

phar:NCTC13077_01324 pf:HTH_37 pf:HTH_26 pf:HTH_19 pf:HTH_3 pf:HTH_20

pmaz:R5H13_16845 pf:HTH_26 pf:HTH_37 pf:PgaD pf:HTH_19 pf:HTH_3 pf:Put_DNA-bind_N pf:HTH_10 pf:HTH_31 pf:YdaS_toxin

ppav:LOZ86_17260 pf:HTH_26 pf:HTH_19 pf:HTH_11 pf:HTH_37 pf:HTH_3 pf:HTH_10

prr:AT705_08240 pf:HTH_26 pf:HTH_37 pf:DUF6471 pf:PgaD pf:HTH_19 pf:HTH_3 pf:Put_DNA-bind_N pf:HTH_10 pf:HTH_31 pf:YdaS_toxin

psef:PSDVSF_23090 pf:HTH_26 pf:HTH_37 pf:MarR_2 pf:HTH_20 pf:HTH_3 pf:HTH_31 pf:HTH_19 pf:Put_DNA-bind_N pf:HTH_10 pf:YdaS_toxin

saup:NCTC3168_00151 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_3 pf:HTH_10

sbj:CF168_18410 pf:HTH_26 pf:HTH_37 pf:Put_DNA-bind_N pf:HTH_19 pf:PgaD pf:HTH_10 pf:HTH_3 pf:HTH_31

scp:HMPREF0833_10095 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_10

sdc:SDSE_0187 pf:MarR pf:HTH_37 pf:HTH_26 pf:HTH_24 pf:DUF6471 pf:Phage_CI_repr pf:MarR_2 pf:Xre-like-HTH pf:HTH_19 pf:HTH_3 pf:HTH_11 pf:HTH_20 pf:HTH_31 pf:Put_DNA-bind_N pf:HTH_10

sdeo:D0436_03245 pf:HTH_26 pf:HTH_37 pf:PgaD pf:HTH_19 pf:HTH_3 pf:HTH_31 pf:Put_DNA-bind_N pf:HTH_10

sdg:SDE12394_00755 pf:MarR pf:HTH_37 pf:HTH_26 pf:HTH_24 pf:DUF6471 pf:Phage_CI_repr pf:MarR_2 pf:Xre-like-HTH pf:HTH_19 pf:HTH_3 pf:HTH_11 pf:HTH_20 pf:HTH_31 pf:Put_DNA-bind_N pf:HTH_10

sdq:SDSE167_0201 pf:HTH_37 pf:MarR_2 pf:HTH_26 pf:HTH_24 pf:DUF6471 pf:Phage_CI_repr pf:MarR pf:Xre-like-HTH pf:HTH_19 pf:HTH_3 pf:HTH_11 pf:HTH_20 pf:HTH_31 pf:Put_DNA-bind_N pf:HTH_10

sds:SDEG_0184 pf:MarR pf:HTH_37 pf:HTH_26 pf:HTH_24 pf:DUF6471 pf:Phage_CI_repr pf:MarR_2 pf:Xre-like-HTH pf:HTH_19 pf:HTH_3 pf:HTH_11 pf:HTH_20 pf:HTH_31 pf:Put_DNA-bind_N pf:HTH_10

seur:FM038_022885 pf:HTH_26 pf:HTH_37 pf:Put_DNA-bind_N pf:HTH_19 pf:HTH_10 pf:PgaD pf:HTH_3 pf:HTH_31 pf:YdaS_toxin

sga:GALLO_1908 pf:DUF6471 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:Xre-like-HTH pf:HTH_3 pf:HTH_11 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_24

sgg:SGGBAA2069_c18600 pf:DUF6471 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_11 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_24

sgt:SGGB_1892 pf:DUF6471 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:Xre-like-HTH pf:HTH_3 pf:HTH_11 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_24

shew:CKQ84_05075 pf:HTH_26 pf:HTH_37 pf:Put_DNA-bind_N pf:HTH_19 pf:HTH_10 pf:PgaD pf:HTH_3 pf:HTH_31 pf:YdaS_toxin

shn:Shewana3_0484 pf:HTH_26 pf:HTH_37 pf:PgaD pf:HTH_19 pf:HTH_3 pf:HTH_31 pf:Put_DNA-bind_N pf:HTH_10

sig:N596_00460 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_10

sip:N597_02135 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_3 pf:HTH_10

ski:D7D50_10090 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_10

slat:J4854_03235 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_10

slu:KE3_1761 pf:DUF6471 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_11 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_24

smay:K0H60_02740 pf:HTH_26 pf:HTH_37 pf:PgaD pf:HTH_19 pf:HTH_3 pf:HTH_31 pf:Put_DNA-bind_N pf:HTH_10

smen:SAMEA4412692_1888 pf:DUF6471 pf:HTH_26 pf:HTH_19 pf:HTH_37 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_31

smn:SMA_1816 pf:DUF6471 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:Put_DNA-bind_N pf:HTH_10 pf:HTH_24

sos:INT76_05240 pf:HTH_26 pf:HTH_19 pf:HTH_37 pf:DUF6471 pf:HTH_20 pf:HTH_3 pf:HTH_10

spat:A0O21_08905 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_24 pf:Xre-like-HTH pf:HTH_3 pf:HTH_10 pf:HTH_20

spsh:FM037_25755 pf:HTH_26 pf:HTH_37 pf:Put_DNA-bind_N pf:HTH_10 pf:HTH_19 pf:PgaD pf:HTH_3 pf:HTH_31 pf:DUF473

srp:SSUST1_0311 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

srum:GPZ88_02875 pf:DUF6471 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_11 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_24

srun:LPB404_03650 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_3 pf:HTH_10

ssb:SSUBM407_0277 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

sse:Ssed_0478 pf:HTH_26 pf:HTH_37 pf:Put_DNA-bind_N pf:HTH_10 pf:HTH_19 pf:PgaD pf:HTH_3 pf:HTH_31 pf:YdaS_toxin

sseh:N7V09_21085 pf:HTH_26 pf:HTH_37 pf:Put_DNA-bind_N pf:HTH_19 pf:PgaD pf:HTH_10 pf:HTH_3 pf:HTH_31

ssf:SSUA7_0287 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

ssi:SSU0286 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

ssk:SSUD12_0291 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31 pf:Succ_CoA_lig

ssq:SSUD9_0338 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

sss:SSUSC84_0275 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

sst:SSUST3_0319 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

ssu:SSU05_0307 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

ssui:T15_0312 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

ssus:NJAUSS_0294 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

ssut:TL13_0341 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

ssuy:YB51_1550 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

ssv:SSU98_0303 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

ssw:SSGZ1_0282 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

stb:SGPB_1737 pf:DUF6471 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:Xre-like-HTH pf:HTH_3 pf:HTH_11 pf:HTH_10 pf:Put_DNA-bind_N pf:HTH_24

stra:ATM98_00530 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_3 pf:HTH_10

sui:SSUJS14_0292 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

suo:SSU12_0290 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

sup:YYK_01345 pf:HTH_26 pf:HTH_37 pf:HTH_19 pf:HTH_5 pf:HTH_3 pf:HTH_20 pf:HTH_24 pf:HTH_10 pf:HTH_31

svf:NCTC3166_00622 pf:HTH_26 pf:HTH_37 pf:HTH_5 pf:HTH_19 pf:HTH_3 pf:HTH_10

tpel:P0M28_01800 pf:HTH_26 pf:HTH_37 pf:HTH_3 pf:HTH_31 pf:HTH_19 pf:HTH_10 pf:Put_DNA-bind_N