Search common motifs in selected sequences


  
Motifs : pf:AAAATPase family associated with various cellular activities (AAA)
 pf:AAA_14AAA domain
 pf:AAA_15AAA ATPase domain
 pf:AAA_18AAA domain
 pf:AAA_19AAA domain
 pf:AAA_2AAA domain (Cdc48 subfamily)
 pf:AAA_21AAA domain, putative AbiEii toxin, Type IV TA system
 pf:AAA_22AAA domain
 pf:AAA_23AAA domain
 pf:AAA_28AAA domain
 pf:AAA_29P-loop containing region of AAA domain
 pf:AAA_33AAA domain
 pf:AAA_5AAA domain (dynein-related subfamily)
 pf:AAA_lid_9
 pf:ABC_tranABC transporter
 pf:AIG1AIG1 family
 pf:ANAPC3Anaphase-promoting complex, cyclosome, subunit 3
 pf:ANF_receptorReceptor family ligand binding region
 pf:APG6_N
 pf:ATG16Autophagy protein 16 (ATG16)
 pf:AhtL-like_1st
 pf:ApolipoproteinApolipoprotein A1/A4/E domain
 pf:ArfADP-ribosylation factor family
 pf:AsmA_2AsmA-like C-terminal region
 pf:B5tRNA synthetase B5 domain
 pf:BMT5-like
 pf:Bacillus_HBLBacillus haemolytic enterotoxin (HBL)
 pf:Baculo_PEP_CBaculovirus polyhedron envelope protein, PEP, C terminus
 pf:BromodomainBromodomain
 pf:COG4_N
 pf:Cas_APE2256CRISPR-associated protein (Cas_APE2256)
 pf:CdaS_N
 pf:ClpB_D2-smallC-terminal, D2-small domain, of ClpB protein
 pf:Clp_NClp amino terminal domain, pathogenicity island component
 pf:Crescentin
 pf:Csm1_B
 pf:Csm4_C
 pf:DEADDEAD/DEAH box helicase
 pf:DNA_gyraseA_CDNA gyrase C-terminal domain, beta-propeller
 pf:DNA_topoisoIVDNA gyrase/topoisomerase IV, subunit A
 pf:DNMT1-RFDCytosine specific DNA methyltransferase replication foci domain
 pf:DUF1151Protein of unknown function (DUF1151)
 pf:DUF1524Protein of unknown function (DUF1524)
 pf:DUF1664Protein of unknown function (DUF1664)
 pf:DUF1722Protein of unknown function (DUF1722)
 pf:DUF2460Conserved hypothetical protein 2217 (DUF2460)
 pf:DUF262Protein of unknown function DUF262
 pf:DUF3670SNF2 Helicase protein
 pf:DUF4407Domain of unknown function (DUF4407)
 pf:DUF4781Domain of unknown function (DUF4781)
 pf:DUF4854Domain of unknown function (DUF4854)
 pf:DUF5684
 pf:DUF948Bacterial protein of unknown function (DUF948)
 pf:DZRDouble zinc ribbon
 pf:DZR_2
 pf:Dynamin_NDynamin family
 pf:Exonuc_VII_LExonuclease VII, large subunit
 pf:Exonuc_V_gammaExodeoxyribonuclease V, gamma subunit
 pf:FDX-ACBFerredoxin-fold anticodon binding domain
 pf:FeoB_NFerrous iron transport protein B
 pf:Fez1Fez1
 pf:GGDEFDiguanylate cyclase, GGDEF domain
 pf:GGDEF_2
 pf:GTP1_OBGGTP1/OBG
 pf:GTP_EFTUElongation factor Tu GTP binding domain
 pf:GlnD_UR_UTaseGlnD PII-uridylyltransferase
 pf:GlnEGlutamate-ammonia ligase adenylyltransferase
 pf:HEPNHEPN domain
 pf:Helicase_CHelicase conserved C-terminal domain
 pf:HrpB7Bacterial type III secretion protein (HrpB7)
 pf:IF2_NTranslation initiation factor IF-2, N-terminal region
 pf:IPPTIPP transferase
 pf:IPTIsopentenyl transferase
 pf:KinesinKinesin motor domain
 pf:LRR_1Leucine Rich Repeat
 pf:LRR_4Leucine Rich repeats (2 copies)
 pf:LRR_8Leucine rich repeat
 pf:LRR_9Leucine-rich repeat
 pf:LTP_2Probable lipid transfer
 pf:Lig_chanLigand-gated ion channel
 pf:Lig_chan-Glu_bdLigated ion channel L-glutamate- and glycine-binding site
 pf:Linker_histonelinker histone H1 and H5 family
 pf:LupA
 pf:MMR_HSR150S ribosome-binding GTPase
 pf:Maf_flag10_N
 pf:Meth_synt_1Cobalamin-independent synthase, N-terminal domain
 pf:Meth_synt_2Cobalamin-independent synthase, Catalytic domain
 pf:Microtub_bdMicrotubule binding
 pf:MptE-like
 pf:MtrGTetrahydromethanopterin S-methyltransferase, subunit G
 pf:Mycop_pep_DUF31
 pf:NFACT-R_1
 pf:NFACT-R_2
 pf:NFACT_N
 pf:NTP_transf_2Nucleotidyltransferase domain
 pf:NUMOD4NUMOD4 motif
 pf:Occludin_ELLOccludin homology domain
 pf:PAPS_reductPhosphoadenosine phosphosulfate reductase family
 pf:PNPase_CPolyribonucleotide phosphorylase C terminal
 pf:Peptidase_C48Ulp1 protease family, C-terminal catalytic domain
 pf:Peptidase_M16Insulinase (Peptidase family M16)
 pf:Peptidase_M16_CPeptidase M16 inactive domain
 pf:Peptidase_S26Signal peptidase, peptidase S26
 pf:Peptidase_S7Peptidase S7, Flavivirus NS3 serine protease
 pf:Polbeta
 pf:Por_Secre_tail
 pf:RAMPsRAMP superfamily
 pf:RAPRAP domain
 pf:RNA_helicaseRNA helicase
 pf:RNase_E_GRibonuclease E/G family
 pf:RNase_E_G_Thio
 pf:RecC_C
 pf:RecombinaseRecombinase
 pf:ResIIIType III restriction enzyme, res subunit
 pf:Ribosomal_S5_CRibosomal protein S5, C-terminal domain
 pf:RsgA_GTPase
 pf:RuvB_NHolliday junction DNA helicase ruvB N-terminus
 pf:S1S1 RNA binding domain
 pf:SBP_bac_3Bacterial extracellular solute-binding proteins, family 3
 pf:SMC_NRecF/RecN/SMC N terminal domain
 pf:SMC_hingeSMC proteins Flexible Hinge Domain
 pf:SNF2-rel_dom
 pf:SRPRBSignal recognition particle receptor beta subunit
 pf:SRP_SPBSignal peptide binding domain
 pf:SWIMSWIM zinc finger
 pf:Sigma54_activatSigma-54 interaction domain
 pf:Sigma70_nerSigma-70, non-essential region
 pf:Sigma70_r1_1Sigma-70 factor, region 1.1
 pf:Sigma70_r1_2Sigma-70 factor, region 1.2
 pf:Sigma70_r2Sigma-70 region 2
 pf:Sigma70_r3Sigma-70 region 3
 pf:Sigma70_r4Sigma-70, region 4
 pf:SurA_NSurA N-terminal domain
 pf:T2SSEType II/IV secretion system protein
 pf:TPR_1Tetratricopeptide repeat
 pf:TPR_10Tetratricopeptide repeat
 pf:TPR_11TPR repeat
 pf:TPR_12Tetratricopeptide repeat
 pf:TPR_16Tetratricopeptide repeat
 pf:TPR_17Tetratricopeptide repeat
 pf:TPR_19Tetratricopeptide repeat
 pf:TPR_2Tetratricopeptide repeat
 pf:TPR_20Tetratricopeptide repeat
 pf:TPR_8Tetratricopeptide repeat
 pf:TPR_9Tetratricopeptide repeat
 pf:TRAF_BIRC3_bdTNF receptor-associated factor BIRC3 binding domain
 pf:TaxilinMyosin-like coiled-coil protein
 pf:TorsinTorsin
 pf:UvrD-helicaseUvrD/REP helicase N-terminal domain
 pf:UvrD_CUvrD-like helicase C-terminal domain
 pf:UvrD_C_2UvrD-like helicase C-terminal domain
 pf:V-ATPase_CV-ATPase subunit C
 pf:VAR1Mitochondrial ribosomal protein (VAR1)
 pf:WSDWilliams-Beuren syndrome DDT (WSD), D-TOX E motif
 pf:WWEWWE domain
 pf:XLFXLF-Cernunnos, XRcc4-like factor, NHEJ component
 pf:Zeta_toxinZeta toxin
 pf:Zn_clusFungal Zn(2)-Cys(6) binuclear cluster domain
 pf:tRNA-synt_1tRNA synthetases class I (I, L, M and V)
 pf:tRNA-synt_1etRNA synthetases class I (C) catalytic domain
 pf:tRNA-synt_1gtRNA synthetases class I (M)
 pf:tRNA_bindPutative tRNA binding domain
 pf:tRNA_synthFbeta
 pf:zinc_ribbon_15zinc-ribbon family

ags:114127203 pf:IF2_N pf:XLF


apc:HIMB59_00012950 pf:GlnE pf:Polbeta pf:NTP_transf_2 pf:GlnD_UR_UTase pf:NTP_transf_2 pf:Polbeta pf:GlnE

apin:GFK87_00205 pf:Exonuc_V_gamma pf:RecC_C

apoc:APORC_1978 pf:Maf_flag10_N pf:MptE-like pf:CdaS_N pf:Bromodomain

aqe:NBT05_03995 pf:Por_Secre_tail

bau:BUAPTUC7_342 pf:S1 pf:RNase_E_G pf:RNase_E_G_Thio pf:PNPase_C

blu:K645_2241 pf:AAA_19 pf:DEAD pf:UvrD-helicase pf:AAA_19 pf:UvrD_C pf:UvrD_C pf:UvrD_C_2

cal:CAALFM_C402540WA pf:Zn_clus

caun:CLAUR_023020 pf:RAMPs pf:Csm4_C

cba:CLB_2316 pf:AAA_15 pf:SMC_N pf:AAA_29 pf:AAA_23 pf:ABC_tran pf:AAA_21 pf:DUF1151 pf:APG6_N pf:Crescentin pf:Bacillus_HBL pf:SMC_hinge pf:Crescentin pf:AAA_21

cbb:CLD_2188 pf:AAA_15 pf:SMC_N pf:AAA_29 pf:AAA_23 pf:ABC_tran pf:AAA_21 pf:APG6_N pf:Crescentin pf:Bacillus_HBL pf:SMC_hinge pf:Crescentin pf:AAA_21

cbf:CLI_2508 pf:AAA_15 pf:SMC_N pf:AAA_29 pf:AAA_23 pf:ABC_tran pf:AAA_21 pf:APG6_N pf:Fez1 pf:Crescentin pf:SMC_hinge pf:Crescentin pf:AAA_21

cbh:CLC_2300 pf:AAA_15 pf:SMC_N pf:AAA_29 pf:AAA_23 pf:ABC_tran pf:AAA_21 pf:DUF1151 pf:APG6_N pf:Crescentin pf:Bacillus_HBL pf:SMC_hinge pf:Crescentin pf:AAA_21

cbi:CLJ_B2677 pf:AAA_15 pf:SMC_N pf:AAA_29 pf:AAA_23 pf:ABC_tran pf:AAA_21 pf:DUF1151 pf:APG6_N pf:SMC_N pf:Crescentin pf:Bacillus_HBL pf:SMC_hinge pf:Crescentin pf:AAA_21

cbj:H04402_02478 pf:AAA_15 pf:SMC_N pf:AAA_29 pf:AAA_23 pf:ABC_tran pf:AAA_21 pf:APG6_N pf:Fez1 pf:Crescentin pf:SMC_hinge pf:Crescentin pf:Fez1 pf:AAA_21

cbl:CLK_1829 pf:AAA_15 pf:SMC_N pf:AAA_29 pf:AAA_23 pf:ABC_tran pf:AAA_21 pf:SMC_N pf:APG6_N pf:Crescentin pf:Bacillus_HBL pf:SMC_hinge pf:HrpB7 pf:Crescentin pf:AAA_21

cbo:CBO2452 pf:AAA_15 pf:SMC_N pf:AAA_29 pf:AAA_23 pf:ABC_tran pf:AAA_21 pf:DUF1151 pf:APG6_N pf:Crescentin pf:Bacillus_HBL pf:SMC_hinge pf:Crescentin pf:AAA_21

cby:CLM_2745 pf:AAA_15 pf:SMC_N pf:AAA_29 pf:AAA_23 pf:ABC_tran pf:AAA_21 pf:APG6_N pf:Fez1 pf:Crescentin pf:SMC_hinge pf:Crescentin pf:AAA_21


cld:CLSPO_c25500 pf:AAA_15 pf:SMC_N pf:AAA_29 pf:AAA_23 pf:ABC_tran pf:AAA_21 pf:Fez1 pf:SMC_N pf:Fez1 pf:Crescentin pf:Bacillus_HBL pf:SMC_hinge pf:Fez1 pf:Crescentin pf:AAA_21



crc:A33Y_0144 pf:tRNA-synt_1 pf:tRNA-synt_1g pf:tRNA-synt_1g pf:tRNA-synt_1


crp:CRP_111 pf:tRNA-synt_1 pf:tRNA-synt_1g pf:tRNA-synt_1g pf:tRNA-synt_1


cru:A33U_0144 pf:tRNA-synt_1 pf:tRNA-synt_1g pf:tRNA-synt_1g pf:tRNA-synt_1

crv:A357_0136 pf:tRNA-synt_1 pf:tRNA-synt_1g pf:tRNA-synt_1g pf:tRNA-synt_1

crw:CROST_006890 pf:RAMPs pf:Csm4_C

dci:103524185 pf:LRR_8 pf:LRR_4 pf:LRR_1 pf:LRR_4 pf:LRR_8 pf:LRR_8 pf:LRR_9 pf:LRR_4 pf:LRR_8 pf:LRR_4 pf:LRR_8 pf:LRR_8 pf:LRR_4 pf:LRR_8 pf:LRR_4 pf:LRR_4 pf:LRR_8 pf:LRR_8 pf:LRR_4 pf:LRR_4 pf:LRR_8 pf:LRR_4 pf:LRR_8 pf:LRR_4 pf:LRR_4 pf:LRR_8 pf:LRR_9 pf:LRR_8 pf:LRR_4 pf:LRR_4 pf:LRR_1

ddi:DDB_G0271406 pf:DUF4854


eeu:NAREPO1_00960 pf:SurA_N

eme:CEM_324 pf:Sigma70_r1_1 pf:Sigma70_r1_2 pf:Sigma70_ner pf:Sigma70_r2 pf:Sigma70_r3 pf:Sigma70_r4

eof:NARSGI1_01980 pf:T2SSE pf:IPT pf:IPPT

eop:NARPIN1_02320 pf:GTP1_OBG pf:SRPRB pf:GTP_EFTU pf:MMR_HSR1 pf:FeoB_N pf:AIG1 pf:Dynamin_N pf:Arf pf:Dynamin_N

eor:NARRFE1_01880 pf:B5 pf:B5 pf:tRNA_synthFbeta pf:FDX-ACB

ero:EROM_030390 pf:V-ATPase_C pf:BMT5-like

gsa:FOC50_07270 pf:NFACT_N pf:NFACT-R_1 pf:NFACT-R_2

hcr:X271_00199 pf:tRNA_bind pf:B5 pf:tRNA_synthFbeta

hsg:HPPSJP_2060 pf:DUF262

kla:KllafMp07 pf:VAR1 pf:SRP_SPB

kmx:CRD48_mgp01 pf:VAR1



maeo:JRV97_06850 pf:GGDEF pf:GGDEF_2 pf:Csm1_B

mhh:MYM_0030 pf:DUF4407

mhm:SRH_02040 pf:DUF4407

mhr:MHR_0026 pf:DUF4407

mhv:Q453_0032 pf:DUF4407



mlag:QEG99_03040 pf:Mycop_pep_DUF31 pf:Mycop_pep_DUF31 pf:Peptidase_S7


mmil:sm9_1199 pf:zinc_ribbon_15 pf:DZR_2 pf:DZR

mmo:MMOB4620 pf:ResIII pf:AAA_19 pf:DEAD pf:WWE


myr:MYRA21_0040 pf:DUF262

naer:MJ1_0474 pf:Taxilin pf:Occludin_ELL pf:Taxilin pf:Ribosomal_S5_C pf:DUF1664 pf:Occludin_ELL pf:TRAF_BIRC3_bd pf:DUF948 pf:MtrG

ndl:NASALF_081 pf:Meth_synt_1 pf:Meth_synt_2 pf:Meth_synt_2 pf:Meth_synt_1

ocs:OF820_08375 pf:SWIM pf:DUF3670 pf:DEAD pf:SNF2-rel_dom pf:AAA_19 pf:Helicase_C

ocy:OSSY52_19180 pf:Cas_APE2256

pbat:JL193_12070 pf:DUF2460

pbe:PBANKA_0305400 pf:Linker_histone

pcb:BN827_A360 pf:Clp_N pf:AAA_lid_9 pf:Torsin pf:RuvB_N pf:AAA_2 pf:AAA_22 pf:Zeta_toxin pf:Sigma54_activat pf:ABC_tran pf:AAA_33 pf:AAA_5 pf:AAA pf:AAA_18 pf:AAA_14 pf:RNA_helicase pf:AAA_28 pf:ClpB_D2-small

pcea:J3359_13025 pf:DUF2460

pfa:PF3D7_1448500 pf:DNMT1-RFD pf:WSD



pgab:PGSY75_0516000 pf:LTP_2 pf:RAP

pkn:I6V24_pgp09 pf:Clp_N pf:AAA_lid_9 pf:Torsin pf:RuvB_N pf:AAA_2 pf:Zeta_toxin pf:AAA_22 pf:Sigma54_activat pf:AAA_33 pf:AAA_5 pf:AAA pf:AAA_18 pf:RNA_helicase pf:ClpB_D2-small

pmal:PMUG01_14078300 pf:Microtub_bd pf:Kinesin pf:DUF1722


ppet:C9I82_083 pf:AsmA_2




pub:SAR11_1214 pf:ANAPC3 pf:TPR_12 pf:TPR_1 pf:TPR_11 pf:TPR_19 pf:TPR_17 pf:TPR_1 pf:TPR_2 pf:TPR_8 pf:TPR_12 pf:TPR_16 pf:TPR_9 pf:TPR_10 pf:TPR_11 pf:TPR_19 pf:HEPN pf:TPR_20 pf:TPR_17 pf:TPR_1 pf:TPR_2 pf:TPR_8

pvv:PVVCY_0901980 pf:Peptidase_M16 pf:Peptidase_M16_C

pyo:PY17X_1370500 pf:GTP_EFTU pf:AAA_29 pf:RsgA_GTPase pf:GTP_EFTU pf:RNA_helicase pf:MMR_HSR1 pf:Dynamin_N pf:Dynamin_N

rfe:RF_0112 pf:LupA pf:Peptidase_C48

rmd:113553924 pf:XLF pf:IF2_N

salx:SALLE_v1c09570 pf:DUF262 pf:DUF1524



slal:111668217 pf:ANF_receptor pf:Lig_chan-Glu_bd pf:SBP_bac_3 pf:Lig_chan pf:SBP_bac_3 pf:ATG16

smc:SmuNN2025_0845 pf:DNA_topoisoIV pf:DNA_gyraseA_C pf:NUMOD4 pf:DNA_gyraseA_C pf:DNA_gyraseA_C

smf:Smon_0608 pf:TPR_2

smg:SMGWSS_178 pf:DUF5684 pf:Peptidase_S26 pf:Peptidase_S26

smj:SMULJ23_0844 pf:DNA_topoisoIV pf:DNA_gyraseA_C pf:AhtL-like_1st pf:DNA_gyraseA_C pf:DNA_gyraseA_C

smu:SMU_1204 pf:DNA_topoisoIV pf:DNA_gyraseA_C pf:DNA_gyraseA_C pf:DNA_gyraseA_C

smua:SMUFR_1053 pf:DNA_topoisoIV pf:DNA_gyraseA_C pf:DNA_gyraseA_C pf:DNA_gyraseA_C

smub:IM46_323 pf:DUF5684 pf:Peptidase_S26 pf:Peptidase_S26

smut:SMUGS5_05345 pf:DNA_topoisoIV pf:DNA_gyraseA_C pf:DNA_gyraseA_C pf:DNA_gyraseA_C



vcrb:124428444 pf:DUF4781

vg:1449940 pf:Exonuc_VII_L pf:Exonuc_VII_L pf:COG4_N pf:Baculo_PEP_C pf:Apolipoprotein pf:PAPS_reduct


zin:ZICARI_071 pf:tRNA-synt_1 pf:tRNA-synt_1g pf:tRNA-synt_1e pf:Recombinase pf:tRNA-synt_1 pf:tRNA-synt_1e