Search common motifs in selected sequences


  
Motifs : pf:2-Hacid_dh_CD-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
 pf:3HCDH_N3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
 pf:AAAATPase family associated with various cellular activities (AAA)
 pf:AAA_11AAA domain
 pf:AAA_12AAA domain
 pf:AAA_14AAA domain
 pf:AAA_15AAA ATPase domain
 pf:AAA_16AAA ATPase domain
 pf:AAA_18AAA domain
 pf:AAA_19AAA domain
 pf:AAA_2AAA domain (Cdc48 subfamily)
 pf:AAA_21AAA domain, putative AbiEii toxin, Type IV TA system
 pf:AAA_22AAA domain
 pf:AAA_23AAA domain
 pf:AAA_24AAA domain
 pf:AAA_25AAA domain
 pf:AAA_27AAA domain
 pf:AAA_28AAA domain
 pf:AAA_29P-loop containing region of AAA domain
 pf:AAA_30AAA domain
 pf:AAA_33AAA domain
 pf:AAA_5AAA domain (dynein-related subfamily)
 pf:AAA_7P-loop containing dynein motor region D3
 pf:AARP2CNAARP2CN (NUC121) domain
 pf:ABC_tranABC transporter
 pf:ABC_tran_CTDABC transporter C-terminal domain
 pf:ABC_tran_XtnABC transporter
 pf:ATG16Autophagy protein 16 (ATG16)
 pf:ATP-synt_abATP synthase alpha/beta family, nucleotide-binding domain
 pf:ATPase_2ATPase domain predominantly from Archaea
 pf:Alanine_zipperAlanine-zipper, major outer membrane lipoprotein
 pf:Alk_phosphataseAlkaline phosphatase
 pf:AmidaseAmidase
 pf:An_peroxidaseAnimal haem peroxidase
 pf:ApbAKetopantoate reductase PanE/ApbA
 pf:ApolipoproteinApolipoprotein A1/A4/E domain
 pf:BOP1NTBOP1NT (NUC169) domain
 pf:BRCA-2_helicalBRCA2, helical
 pf:Baculo_PEP_CBaculovirus polyhedron envelope protein, PEP, C terminus
 pf:Bclx_interactBcl-x interacting, BH3 domain
 pf:BcsBBacterial cellulose synthase subunit
 pf:COG6_N
 pf:COMPASS-Shg1COMPASS (Complex proteins associated with Set1p) component shg1
 pf:CaM_bindingPlant calmodulin-binding domain
 pf:CarbopepD_reg_2CarboxypepD_reg-like domain
 pf:Cnn_1NCentrosomin N-terminal motif 1
 pf:CooC_CCS1-pili formation C-terminal
 pf:CorACorA-like Mg2+ transporter protein
 pf:Cu_amine_oxidN1Copper amine oxidase N-terminal domain
 pf:DEADDEAD/DEAH box helicase
 pf:DHquinase_IType I 3-dehydroquinase
 pf:DO-GTPase2
 pf:DUF1161Protein of unknown function (DUF1161)
 pf:DUF1664Protein of unknown function (DUF1664)
 pf:DUF2802Protein of unknown function (DUF2802)
 pf:DUF2935Domain of unknown function (DUF2935)
 pf:DUF3365Protein of unknown function (DUF3365)
 pf:DUF3656Collagenase
 pf:DUF3902Protein of unknown function (DUF3902)
 pf:DUF4011Protein of unknown function (DUF4011)
 pf:DUF4200Domain of unknown function (DUF4200)
 pf:DUF4446Protein of unknown function (DUF4446)
 pf:DUF5082Domain of unknown function (DUF5082)
 pf:DUF5713
 pf:DUF6185
 pf:DUF6188
 pf:DUF6805
 pf:DUF87Domain of unknown function DUF87
 pf:DUF937Bacterial protein of unknown function (DUF937)
 pf:DUF948Bacterial protein of unknown function (DUF948)
 pf:Dynamin_NDynamin family
 pf:EALEAL domain
 pf:EIIA-manPTS system fructose IIA component
 pf:ERM_helical
 pf:EccEPutative type VII ESX secretion system translocon, EccE
 pf:F420_oxidoredNADP oxidoreductase coenzyme F420-dependent
 pf:FAD_binding_2FAD binding domain
 pf:FapA
 pf:Fib_alphaFibrinogen alpha/beta chain family
 pf:Fil_haemaggHaemagluttinin repeat
 pf:GCR1_CTranscriptional activator of glycolytic enzymes
 pf:GGDEFDiguanylate cyclase, GGDEF domain
 pf:GTP_EFTUElongation factor Tu GTP binding domain
 pf:GpA_ATPase
 pf:HI0933_likeHI0933-like protein
 pf:HSBP1Heat shock factor binding protein 1
 pf:HTH_Crp_2Crp-like helix-turn-helix domain
 pf:Helicase_RecDHelicase
 pf:HemolysinCabindHaemolysin-type calcium-binding repeat (2 copies)
 pf:HerA_C
 pf:HrpB7Bacterial type III secretion protein (HrpB7)
 pf:Hydrolasehaloacid dehalogenase-like hydrolase
 pf:INCENP_ARK-bindInner centromere protein, ARK binding region
 pf:INGInhibitor of growth proteins N-terminal histone-binding
 pf:IlvNAcetohydroxy acid isomeroreductase, NADPH-binding domain
 pf:Imm26Immunity protein 26
 pf:InhA-like_MAM
 pf:InhA-like_VEG
 pf:KAP_NTPaseKAP family P-loop domain
 pf:KinesinKinesin motor domain
 pf:LAM_CLysine-2,3-aminomutase
 pf:LRR_5Leucine rich repeats (6 copies)
 pf:Laminin_ILaminin Domain I
 pf:MCR_alphaMethyl-coenzyme M reductase alpha subunit, C-terminal domain
 pf:MMR_HSR150S ribosome-binding GTPase
 pf:MTES_1575
 pf:MafMaf-like protein
 pf:MarRMarR family
 pf:MarR_2MarR family
 pf:Mce4_CUP1Cholesterol uptake porter CUP1 of Mce4, putative
 pf:Mcp40H-20_sensor
 pf:MeaB
 pf:MetalloenzymeMetalloenzyme superfamily
 pf:Mg_chelataseMagnesium chelatase, subunit ChlI
 pf:MgtE_NMgtE intracellular N domain
 pf:Microtub_bdMicrotubule binding
 pf:MobBMolybdopterin guanine dinucleotide synthesis protein B
 pf:MogR_DNAbindDNA binding domain of the motility gene repressor (MogR)
 pf:Myco_arth_vir_NMycoplasma virulence signal region (Myco_arth_vir_N)
 pf:NACHTNACHT domain
 pf:NAD_Gly3P_dh_NNAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
 pf:NAD_binding_2NAD binding domain of 6-phosphogluconate dehydrogenase
 pf:NAD_binding_7Putative NAD(P)-binding
 pf:NB-ARCNB-ARC domain
 pf:NFACT-R_2
 pf:NTPase_1NTPase
 pf:NagA_C
 pf:NusBNusB family
 pf:PACT_coil_coilPericentrin-AKAP-450 domain of centrosomal targeting protein
 pf:PASPAS fold
 pf:PAS_4PAS fold
 pf:PAS_8PAS domain
 pf:PAS_9PAS domain
 pf:PHD_2PHD-finger
 pf:PKKPolo kinase kinase
 pf:PK_Tyr_Ser-Thr
 pf:PRDPRD domain
 pf:Peptidase_M6Immune inhibitor A peptidase M6
 pf:Peptidase_M7Streptomyces extracellular neutral proteinase (M7) family
 pf:Peptidase_U32Peptidase family U32
 pf:PhosphodiestType I phosphodiesterase / nucleotide pyrophosphatase
 pf:PkinaseProtein kinase domain
 pf:PlugTonB-dependent Receptor Plug Domain
 pf:PspA_IM30PspA/IM30 family
 pf:Pyr_redox_2Pyridine nucleotide-disulphide oxidoreductase
 pf:RAPRAP domain
 pf:RIBIOP_C40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
 pf:RNA_helicaseRNA helicase
 pf:Reprolysin_3Metallo-peptidase family M12B Reprolysin-like
 pf:ResIIIType III restriction enzyme, res subunit
 pf:Response_regResponse regulator receiver domain
 pf:Ribosomal_S4eRibosomal family S4e
 pf:RocRas of Complex, Roc, domain of DAPkinase
 pf:RsgA_GTPase
 pf:RuvB_NHolliday junction DNA helicase ruvB N-terminus
 pf:SAM_KSR1
 pf:SDH_C
 pf:SF-assemblinSF-assemblin/beta giardin
 pf:SHE3SWI5-dependent HO expression protein 3
 pf:SKA2Spindle and kinetochore-associated protein 2
 pf:SLFN-g3_helicase
 pf:SMC_NRecF/RecN/SMC N terminal domain
 pf:SMC_hingeSMC proteins Flexible Hinge Domain
 pf:S_layer_CS-layer like family, C-terminal region
 pf:SbcC_Walker_B
 pf:Shikimate_DHShikimate / quinate 5-dehydrogenase
 pf:Shikimate_dh_NShikimate dehydrogenase substrate binding domain
 pf:Sigma54_activatSigma-54 interaction domain
 pf:Sigma70_nerSigma-70, non-essential region
 pf:SlyXSlyX
 pf:TBP-bindingTATA box-binding protein binding
 pf:TECR_N
 pf:THF_DHG_CYH_CTetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
 pf:TMF_DNA_bdTATA element modulatory factor 1 DNA binding
 pf:Toprim_4Toprim domain
 pf:Tox-ODYAM1Toxin in Odyssella and Amoebophilus
 pf:TrmBSugar-specific transcriptional regulator TrmB
 pf:TsaEThreonylcarbamoyl adenosine biosynthesis protein TsaE
 pf:UPF0552Uncharacterised protein family UPF0552
 pf:V_ATPase_IV-type ATPase 116kDa subunit family
 pf:VasculinVascular protein family Vasculin-like 1
 pf:Viral_helicase1Viral (Superfamily 1) RNA helicase
 pf:ZapBCell division protein ZapB
 pf:bpMoxR
 pf:bpX6
 pf:cobWCobW/HypB/UreG, nucleotide-binding domain
 pf:nSTAND3
 pf:zf-HC5HC2HPHD-like zinc-binding domain
 pf:zf-HC5HC2H_2PHD-zinc-finger like domain

csho:CSHOW_1197 pf:Sigma70_ner pf:NusB

ccoc:CCON33237_0745 pf:Sigma70_ner

cco:CCC13826_1358 pf:TBP-binding

had:CDV25_06195 pf:Amidase pf:SAM_KSR1















cjx:BN867_01130 pf:Vasculin

cjq:UC78_0124 pf:GCR1_C

cpel:CPEL_0812 pf:NagA_C

cln:UPTC3659_0852 pf:MogR_DNAbind pf:NagA_C

camr:CAQ16704_0801 pf:NagA_C

carm:CARM_0814 pf:NagA_C




coj:CORN_0833 pf:NagA_C

ccun:CCUN_0748 pf:Maf




cjei:N135_00839 pf:LAM_C

cjej:N564_00773 pf:LAM_C

cjen:N755_00814 pf:LAM_C

cjeu:N565_00817 pf:LAM_C

camp:CFT03427_0358 pf:BOP1NT

cfp:CR44_01800 pf:BOP1NT





cjj:CJJ81176_0835 pf:CooC_C


chv:CHELV3228_1813 pf:TECR_N



csf:CSUB8523_1790 pf:DUF5713

csm:CSUB8521_1689 pf:DUF5713



sku:Sulku_1532 pf:MCR_alpha pf:MgtE_N

cll:CONCH_1428 pf:DUF5713

clq:UPTC4110_1457 pf:DUF5713

clm:UPTC16712_1487 pf:DUF5713

clr:UPTC16701_1452 pf:DUF5713

chw:A2J15_004210 pf:GpA_ATPase pf:Mcp40H-20_sensor pf:Imm26


baft:P612_02605 pf:SlyX pf:Baculo_PEP_C pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:Baculo_PEP_C pf:Apolipoprotein pf:Baculo_PEP_C pf:Baculo_PEP_C pf:DUF2802

afz:127564781 pf:PACT_coil_coil

nfb:124179644 pf:CorA pf:An_peroxidase

shr:100921803 pf:PACT_coil_coil

baf:BAPKO_0539 pf:Baculo_PEP_C pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:Baculo_PEP_C pf:Apolipoprotein pf:Baculo_PEP_C pf:Baculo_PEP_C pf:DUF2802

bafe:BAFK78_512 pf:SlyX pf:Baculo_PEP_C pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:Baculo_PEP_C pf:Apolipoprotein pf:Baculo_PEP_C pf:Baculo_PEP_C pf:DUF2802

bafz:BafPKo_0527 pf:Baculo_PEP_C pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:Baculo_PEP_C pf:Apolipoprotein pf:Baculo_PEP_C pf:Baculo_PEP_C pf:DUF2802

bafh:BafHLJ01_0558 pf:SlyX pf:Baculo_PEP_C pf:Apolipoprotein pf:Apolipoprotein pf:Apolipoprotein pf:SF-assemblin pf:Apolipoprotein pf:Baculo_PEP_C pf:Apolipoprotein pf:Baculo_PEP_C pf:Baculo_PEP_C pf:DUF2802


vra:106752570 pf:CaM_binding pf:CaM_binding

npt:124217206 pf:CorA pf:DUF6188 pf:An_peroxidase

meme:HYG87_05145 pf:Response_reg pf:PAS pf:PAS_4 pf:PAS_9 pf:PAS_8 pf:PAS pf:PAS_4 pf:PAS_9 pf:DUF1161

chyo:CHH_0151 pf:Ribosomal_S4e


nvg:124298592 pf:CorA pf:An_peroxidase

nlo:107227369 pf:CorA pf:DUF6188 pf:An_peroxidase

fho:H9Q81_04275 pf:AAA_15 pf:SMC_N pf:AAA_29 pf:AAA_23 pf:AAA_21 pf:DUF937 pf:SMC_hinge pf:AAA_15 pf:AAA_21 pf:SbcC_Walker_B

miw:EER00_05010 pf:DUF4011 pf:AAA_11 pf:AAA_30 pf:DEAD pf:AAA_19 pf:bpMoxR pf:AAA_22 pf:SLFN-g3_helicase pf:Viral_helicase1 pf:Helicase_RecD pf:AAA_12 pf:MTES_1575 pf:RAP

ccrd:H9Q19_00895 pf:DHquinase_I pf:ApbA pf:Shikimate_dh_N pf:THF_DHG_CYH_C pf:Shikimate_DH pf:2-Hacid_dh_C pf:NAD_binding_7 pf:IlvN pf:Pyr_redox_2 pf:3HCDH_N pf:HI0933_like pf:F420_oxidored pf:NAD_Gly3P_dh_N pf:FAD_binding_2 pf:NAD_binding_2 pf:SDH_C

dqu:106747001 pf:DUF5082 pf:ZapB pf:DUF6185 pf:Bclx_interact pf:Alanine_zipper

fex:115237336 pf:COMPASS-Shg1


etm:CE91St48_08220 pf:MeaB pf:ABC_tran pf:HerA_C pf:AAA_29 pf:ATP-synt_ab pf:AAA_25 pf:KAP_NTPase pf:RuvB_N pf:RsgA_GTPase pf:AAA_28 pf:MMR_HSR1 pf:AAA_16 pf:NACHT pf:AAA_18 pf:DO-GTPase2 pf:MobB pf:Dynamin_N pf:AAA_21 pf:SMC_N pf:nSTAND3 pf:AAA_30 pf:AAA_23 pf:AAA_22 pf:AAA_21 pf:ABC_tran_Xtn pf:RsgA_GTPase pf:AAA_29 pf:ABC_tran pf:AAA_23 pf:TsaE pf:AAA_15 pf:ResIII pf:AAA_16 pf:ATP-synt_ab pf:AAA_25 pf:AAA_7 pf:AAA_24 pf:DUF87 pf:AAA_28 pf:NACHT pf:MMR_HSR1 pf:nSTAND3 pf:DO-GTPase2 pf:NB-ARC pf:NTPase_1 pf:Roc pf:AAA_22 pf:AAA_14 pf:AAA_18 pf:AAA pf:AAA_30 pf:RNA_helicase pf:cobW pf:ATPase_2 pf:AAA_5 pf:AAA_21 pf:AAA_33 pf:AAA_21 pf:SMC_N pf:ABC_tran_Xtn pf:ABC_tran_CTD

haby:HLVA_05950 pf:Peptidase_U32 pf:BRCA-2_helical pf:DUF3656 pf:Peptidase_U32

pvv:PVVCY_1304580 pf:INCENP_ARK-bind


mat:MARTH_orf469 pf:Myco_arth_vir_N pf:SKA2 pf:SKA2

pfd:PFDG_02054 pf:Pkinase pf:PK_Tyr_Ser-Thr

bun:Bun01g_06080 pf:AAA_15 pf:AAA_27 pf:SMC_N pf:AAA_23 pf:AAA_29 pf:AAA_21 pf:ABC_tran pf:Toprim_4 pf:V_ATPase_I pf:DUF4200

cint:HZF06_03420 pf:HTH_Crp_2 pf:MarR pf:MarR_2 pf:TrmB pf:Sigma54_activat pf:Mg_chelatase pf:AAA_7 pf:AAA_5 pf:AAA_22 pf:AAA_2 pf:AAA pf:AAA_14 pf:NACHT pf:RuvB_N pf:PRD pf:EIIA-man pf:PRD

pbe:PBANKA_1011500 pf:zf-HC5HC2H_2 pf:zf-HC5HC2H pf:zf-HC5HC2H_2 pf:PHD_2 pf:zf-HC5HC2H_2 pf:zf-HC5HC2H

pmf:P9303_19271 pf:Fil_haemagg pf:Fil_haemagg pf:HemolysinCabind pf:HemolysinCabind pf:HemolysinCabind

sko:100377776 pf:DO-GTPase2 pf:AAA_14 pf:MMR_HSR1 pf:AAA_22 pf:AAA_18 pf:RNA_helicase pf:AAA pf:GTP_EFTU pf:AARP2CN pf:RIBIOP_C

ecoe:129942140 pf:Alk_phosphatase pf:Metalloenzyme pf:bpX6 pf:Phosphodiest


nam:NAMH_1584 pf:DUF3902 pf:DUF3365 pf:GGDEF pf:Hydrolase pf:EAL

pluf:LFWB_6510 pf:DUF4446 pf:UPF0552 pf:DUF2935

xla:108701321 pf:Microtub_bd pf:Kinesin pf:Cnn_1N

cld:CLSPO_c13150 pf:BcsB pf:NFACT-R_2 pf:DUF6805 pf:S_layer_C

fcv:AWN65_01955 pf:CarbopepD_reg_2 pf:Plug

fsa:C5Q98_03985 pf:LRR_5 pf:Laminin_I pf:FapA pf:ERM_helical pf:DUF948 pf:Mce4_CUP1 pf:SHE3 pf:TMF_DNA_bd pf:Fib_alpha pf:COG6_N pf:DUF1664 pf:DUF4200 pf:TMF_DNA_bd pf:PspA_IM30 pf:COG6_N pf:Fib_alpha pf:TMF_DNA_bd pf:HrpB7 pf:TMF_DNA_bd pf:Cu_amine_oxidN1 pf:Cu_amine_oxidN1

aloy:CJ190_008555 pf:LRR_5 pf:FapA pf:ERM_helical pf:TMF_DNA_bd pf:HSBP1 pf:ATG16 pf:DUF1664 pf:TMF_DNA_bd pf:COG6_N pf:Fib_alpha pf:ATG16 pf:HrpB7 pf:ING pf:ERM_helical pf:TMF_DNA_bd pf:DUF1664 pf:Cu_amine_oxidN1 pf:Cu_amine_oxidN1

mjo:FOF60_03955 pf:EccE pf:Tox-ODYAM1 pf:PKK pf:Peptidase_M6 pf:Reprolysin_3 pf:Peptidase_M7 pf:InhA-like_MAM pf:InhA-like_VEG