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| Motifs : | pf:4HB_MCP_1 | Four helix bundle sensory module for signal transduction
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| | pf:AAA | ATPase family associated with various cellular activities (AAA)
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| | pf:AAA_14 | AAA domain
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| | pf:AAA_16 | AAA ATPase domain
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| | pf:AAA_2 | AAA domain (Cdc48 subfamily)
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| | pf:AAA_22 | AAA domain
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| | pf:AAA_29 | P-loop containing region of AAA domain
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| | pf:AAA_5 | AAA domain (dynein-related subfamily)
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| | pf:AAA_6 | Hydrolytic ATP binding site of dynein motor region D1
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| | pf:AAA_7 | P-loop containing dynein motor region D3
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| | pf:AAA_8 | P-loop containing dynein motor region D4
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| | pf:AAA_9 | ATP-binding dynein motor region D5
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| | pf:AAA_lid_1 | |
| | pf:AAA_lid_11 | |
| | pf:AHH | A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
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| | pf:APP_N | Amyloid A4 N-terminal heparin-binding
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| | pf:ATP-synt_B | ATP synthase B/B' CF(0)
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| | pf:ATP-synt_ab_C | ATP synthase alpha/beta chain, C terminal domain
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| | pf:ATP_bind_3 | PP-loop family
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| | pf:Aida_N | Aida N-terminus
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| | pf:Aminotran_1_2 | Aminotransferase class I and II
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| | pf:Aminotran_5 | Aminotransferase class-V
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| | pf:Baculo_PEP_C | Baculovirus polyhedron envelope protein, PEP, C terminus
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| | pf:Beta_elim_lyase | Beta-eliminating lyase
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| | pf:Borrelia_orfA | Borrelia ORF-A
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| | pf:C2 | C2 domain
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| | pf:CCDC14 | Coiled-coil domain-containing protein 14
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| | pf:CLP1_P | mRNA cleavage and polyadenylation factor CLP1 P-loop
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| | pf:CTK3_C | CTD kinase subunit gamma CTK3 C-terminus
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| | pf:CdhC | CO dehydrogenase/acetyl-CoA synthase complex beta subunit
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| | pf:Coq4 | Coenzyme Q (ubiquinone) biosynthesis protein Coq4
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| | pf:CusS | |
| | pf:Cys_Met_Meta_PP | Cys/Met metabolism PLP-dependent enzyme
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| | pf:DAXX_hist_bd | |
| | pf:DHC_N1 | Dynein heavy chain, N-terminal region 1
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| | pf:DHC_N2 | Dynein heavy chain, N-terminal region 2
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| | pf:DUF1077 | Protein of unknown function (DUF1077)
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| | pf:DUF1629 | Protein of unknown function (DUF1629)
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| | pf:DUF1664 | Protein of unknown function (DUF1664)
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| | pf:DUF1801 | Domain of unknown function (DU1801)
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| | pf:DUF2649 | Protein of unknown function (DUF2649)
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| | pf:DUF2828 | Domain of unknown function (DUF2828)
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| | pf:DUF3551 | Protein of unknown function (DUF3551)
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| | pf:DUF3810 | Protein of unknown function (DUF3810)
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| | pf:DUF4176 | Domain of unknown function (DUF4176)
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| | pf:DUF4459 | Domain of unknown function (DUF4459)
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| | pf:DUF4559 | Domain of unknown function (DUF4559)
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| | pf:DUF4906 | Domain of unknown function (DUF4906)
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| | pf:DUF5454 | |
| | pf:DUF6043 | |
| | pf:DUF6235 | |
| | pf:DUF6277 | |
| | pf:DUF6323 | |
| | pf:DUF6809 | |
| | pf:DUF6832 | |
| | pf:DUF87 | Domain of unknown function DUF87
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| | pf:DegT_DnrJ_EryC1 | DegT/DnrJ/EryC1/StrS aminotransferase family
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| | pf:Dynein_AAA_lid | |
| | pf:Dynein_C | |
| | pf:Dynein_heavy | Dynein heavy chain and region D6 of dynein motor
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| | pf:EF-hand_like | Phosphoinositide-specific phospholipase C, efhand-like
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| | pf:EIIA-man | PTS system fructose IIA component
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| | pf:Exonuc_VII_L | Exonuclease VII, large subunit
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| | pf:Exonuc_V_gamma | Exodeoxyribonuclease V, gamma subunit
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| | pf:FAM180 | FAM180 family
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| | pf:FISNA | Fish-specific NACHT associated domain
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| | pf:Fic_N | Fic/DOC family N-terminal
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| | pf:FtsX | FtsX-like permease family
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| | pf:GDPD | Glycerophosphoryl diester phosphodiesterase family
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| | pf:Glyco_hydr_30_2 | O-Glycosyl hydrolase family 30
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| | pf:Glyco_hydro_30 | Glycosyl hydrolase family 30 TIM-barrel domain
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| | pf:Glyco_hydro_30C | Glycosyl hydrolase family 30 beta sandwich domain
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| | pf:GnsAB_toxin | GnsA/GnsB toxin of bacterial toxin-antitoxin system
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| | pf:HAMP | HAMP domain
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| | pf:HATPase_c | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
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| | pf:HATPase_c_5 | GHKL domain
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| | pf:HEAT | HEAT repeat
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| | pf:HEPN_AbiU2 | |
| | pf:HMG_box_2 | HMG-box domain
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| | pf:HTH_11 | HTH domain
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| | pf:HTH_18 | Helix-turn-helix domain
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| | pf:HTH_3 | Helix-turn-helix
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| | pf:HTH_36 | Helix-turn-helix domain
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| | pf:HTH_5 | Bacterial regulatory protein, arsR family
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| | pf:HTH_AraC | Bacterial regulatory helix-turn-helix proteins, AraC family
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| | pf:HTH_Crp_2 | Crp-like helix-turn-helix domain
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| | pf:HisK-N-like | |
| | pf:HisKA | His Kinase A (phospho-acceptor) domain
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| | pf:Htt_N-HEAT_1 | |
| | pf:Inp1 | Inheritance of peroxisomes protein 1
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| | pf:LIN52 | Retinal tissue protein
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| | pf:LMBR1 | LMBR1-like membrane protein
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| | pf:LRR_6 | Leucine Rich repeat
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| | pf:MCPsignal | Methyl-accepting chemotaxis protein (MCP) signalling domain
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| | pf:MPH2 | |
| | pf:MSSS | |
| | pf:MT | Microtubule-binding stalk of dynein motor
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| | pf:MarR_2 | MarR family
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| | pf:Melibiase_2_C | |
| | pf:Mfa2 | Fimbrillin-A associated anchor proteins Mfa1 and Mfa2
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| | pf:Mg_chelatase | Magnesium chelatase, subunit ChlI
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| | pf:MscL | Large-conductance mechanosensitive channel, MscL
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| | pf:Mt_ATP-synt_B | Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
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| | pf:MutS_V | MutS domain V
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| | pf:N6_N4_Mtase | DNA methylase
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| | pf:NACHT | NACHT domain
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| | pf:NLRC4_HD2 | |
| | pf:NOD2_WH | |
| | pf:NagJ_C | |
| | pf:Nrf1_DNA-bind | NLS-binding and DNA-binding and dimerisation domains of Nrf1
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| | pf:Nup35_RRM_2 | Nup53/35/40-type RNA recognition motif
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| | pf:O-antigen_lig | O-antigen ligase like membrane protein
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| | pf:OmdA | Bacteriocin-protection, YdeI or OmpD-Associated
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| | pf:OmpH | Outer membrane protein (OmpH-like)
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| | pf:Orthopox_F7 | Orthopoxvirus F7 protein
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| | pf:PHO4 | Phosphate transporter family
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| | pf:PI-PLC-X | Phosphatidylinositol-specific phospholipase C, X domain
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| | pf:PI-PLC-Y | Phosphatidylinositol-specific phospholipase C, Y domain
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| | pf:PKcGMP_CC | Coiled-coil N-terminus of cGMP-dependent protein kinase
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| | pf:PRD | PRD domain
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| | pf:PRY | SPRY-associated domain
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| | pf:P_gingi_FimA | Major fimbrial subunit protein (FimA)
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| | pf:ParBc | ParB-like nuclease domain
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| | pf:Pentapeptide | Pentapeptide repeats (8 copies)
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| | pf:Pentapeptide_3 | Pentapeptide repeats (9 copies)
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| | pf:Pentapeptide_4 | Pentapeptide repeats (9 copies)
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| | pf:PhageMin_Tail | Phage-related minor tail protein
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| | pf:Phage_GP20 | Phage minor structural protein GP20
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| | pf:Polo_box_2 | |
| | pf:Prok-RING_4 | Prokaryotic RING finger family 4
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| | pf:Prominin | Prominin
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| | pf:QueC | Queuosine biosynthesis protein QueC
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| | pf:RA | Ras association (RalGDS/AF-6) domain
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| | pf:RB_A | Retinoblastoma-associated protein A domain
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| | pf:RST | RCD1-SRO-TAF4 (RST) plant domain
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| | pf:RasGEF | RasGEF domain
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| | pf:RecC_C | |
| | pf:Response_reg | Response regulator receiver domain
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| | pf:Rsd_AlgQ | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
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| | pf:RuvB_N | Holliday junction DNA helicase ruvB N-terminus
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| | pf:SMI1_KNR4 | SMI1 / KNR4 family (SUKH-1)
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| | pf:SPIN90_LRD | |
| | pf:SPRY | SPRY domain
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| | pf:STAT_int | STAT protein, protein interaction domain
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| | pf:Sec10_N | |
| | pf:SelO | |
| | pf:Sigma54_activ_2 | Sigma-54 interaction domain
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| | pf:Sigma54_activat | Sigma-54 interaction domain
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| | pf:Smr | Smr domain
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| | pf:Sod_Fe_N | Iron/manganese superoxide dismutases, alpha-hairpin domain
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| | pf:SopA | SopA-like central domain
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| | pf:Sulfotransfer_1 | Sulfotransferase domain
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| | pf:T2SSE | Type II/IV secretion system protein
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| | pf:TFIIF_alpha | Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
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| | pf:TH1 | TH1 protein
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| | pf:TMF_DNA_bd | TATA element modulatory factor 1 DNA binding
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| | pf:TMP_2 | Prophage tail length tape measure protein
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| | pf:TMP_3 | |
| | pf:TSP_NTD | |
| | pf:TarH | Tar ligand binding domain homologue
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| | pf:TrmB | Sugar-specific transcriptional regulator TrmB
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| | pf:UTP20_C | |
| | pf:UTP20_N | |
| | pf:Val_tRNA-synt_C | Valyl tRNA synthetase tRNA binding arm
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| | pf:Vps52_CC | |
| | pf:YfbU | YfbU domain
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| | pf:YvbH_ext | YvbH-like oligomerisation region
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| | pf:Zeta_toxin | Zeta toxin
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| | pf:ddrB-ParB | |
| | pf:nSTAND3 | |
| | pf:p450 | Cytochrome P450
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| | pf:vRNAP_dom | |
| | pf:z-alpha | Adenosine deaminase z-alpha domain
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| | pf:zf-C3HC4 | Zinc finger, C3HC4 type (RING finger)
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| | pf:zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger)
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| | pf:zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger)
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| | pf:zf-FLZ | zinc-finger of the FCS-type, C2-C2
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| | pf:zf-RING_5 | zinc-RING finger domain
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| | pf:zf-RING_UBOX | RING-type zinc-finger
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