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| Motifs : | pf:AAA_19 | AAA domain
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| | pf:AAA_22 | AAA domain
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| | pf:AAA_23 | AAA domain
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| | pf:AAA_25 | AAA domain
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| | pf:AAA_7 | P-loop containing dynein motor region D3
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| | pf:ABC1 | ABC1 family
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| | pf:ALIX_LYPXL_bnd | ALIX V-shaped domain binding to HIV
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| | pf:APH | Phosphotransferase enzyme family
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| | pf:ATPase | KaiC
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| | pf:Ank | Ankyrin repeat
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| | pf:Ank_2 | Ankyrin repeats (3 copies)
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| | pf:Ank_4 | Ankyrin repeats (many copies)
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| | pf:BTB | BTB/POZ domain
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| | pf:CADH_Y-type_LIR | |
| | pf:CBM_14 | Chitin binding Peritrophin-A domain
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| | pf:CMS1 | U3-containing 90S pre-ribosomal complex subunit
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| | pf:CUE | CUE domain
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| | pf:CUT | CUT domain
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| | pf:Ca_chan_IQ | Voltage gated calcium channel IQ domain
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| | pf:Cadherin | Cadherin domain
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| | pf:Cadherin_3 | Cadherin-like
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| | pf:Chitin_bind_4 | Insect cuticle protein
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| | pf:DEAD | DEAD/DEAH box helicase
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| | pf:DREV | DREV methyltransferase
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| | pf:DUF2368 | Uncharacterised conserved protein (DUF2368)
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| | pf:DUF3300 | Protein of unknown function (DUF3300)
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| | pf:DUF3450 | Protein of unknown function (DUF3450)
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| | pf:DUF4573 | Domain of unknown function (DUF4573)
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| | pf:DUF5427 | |
| | pf:DUF6030 | |
| | pf:DUF719 | Protein of unknown function (DUF719)
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| | pf:DbpA | DbpA RNA binding domain
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| | pf:EBV-NA1 | Epstein Barr virus nuclear antigen-1, DNA-binding domain
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| | pf:EOS1 | N-glycosylation protein
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| | pf:ERCC3_RAD25_C | ERCC3/RAD25/XPB C-terminal helicase
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| | pf:FAM176 | FAM176 family
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| | pf:FDF | FDF domain
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| | pf:FTSW_RODA_SPOVE | Cell cycle protein
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| | pf:Fibrillarin | Fibrillarin
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| | pf:Flavi_DEAD | Flavivirus DEAD domain
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| | pf:FoP_duplication | C-terminal duplication domain of Friend of PRMT1
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| | pf:GCD14 | tRNA methyltransferase complex GCD14 subunit
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| | pf:GPHH | Voltage-dependent L-type calcium channel, IQ-associated
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| | pf:GRP | Glycine rich protein family
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| | pf:Gag_p24_C | |
| | pf:Gar1 | Gar1/Naf1 RNA binding region
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| | pf:HA2_C | |
| | pf:HA2_N | |
| | pf:HHH_3 | Helix-hairpin-helix motif
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| | pf:HHH_6 | Helix-hairpin-helix motif
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| | pf:HHH_7 | Helix-hairpin-helix motif
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| | pf:HHH_9 | |
| | pf:Helicase_C | Helicase conserved C-terminal domain
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| | pf:Helicase_C_2 | Helicase C-terminal domain
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| | pf:Homeobox_KN | Homeobox KN domain
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| | pf:Homeodomain | |
| | pf:Hormone_recep | Ligand-binding domain of nuclear hormone receptor
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| | pf:IFT57 | Intra-flagellar transport protein 57
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| | pf:Ion_trans | Ion transport protein
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| | pf:Keratin | Keratin
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| | pf:LANA1_DNA-bd | |
| | pf:LSM14 | Scd6-like Sm domain
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| | pf:Lactamase_B | Metallo-beta-lactamase superfamily
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| | pf:Lactamase_B_2 | Beta-lactamase superfamily domain
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| | pf:MAGE | MAGE family
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| | pf:MARF1_RRM1 | |
| | pf:MBD | Methyl-CpG binding domain
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| | pf:Methyltr_RsmB-F | 16S rRNA methyltransferase RsmB/F
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| | pf:Mis12 | Mis12 protein
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| | pf:NACHT | NACHT domain
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| | pf:NLPC_P60 | NlpC/P60 family
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| | pf:NRDE-2 | NRDE-2, necessary for RNA interference
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| | pf:NUC153 | NUC153 domain
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| | pf:Noc2 | Noc2p family
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| | pf:Nop14 | Nop14-like family
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| | pf:Nup35_RRM_2 | Nup53/35/40-type RNA recognition motif
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| | pf:OB_NTP_bind | Oligonucleotide/oligosaccharide-binding (OB)-fold
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| | pf:PCMT | Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
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| | pf:PE | PE family
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| | pf:PGRS | |
| | pf:PG_binding_1 | Putative peptidoglycan binding domain
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| | pf:PHTB1_C | PTHB1 C-terminus
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| | pf:PKD_channel | Polycystin cation channel
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| | pf:PK_Tyr_Ser-Thr | |
| | pf:PTS-HPr | PTS HPr component phosphorylation site
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| | pf:Pdase_C33_assoc | |
| | pf:PepSY_TM | PepSY-associated TM region
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| | pf:PepSY_TM_like_2 | Putative PepSY_TM-like
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| | pf:Peptidase_C2 | Calpain family cysteine protease
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| | pf:Pex19 | Pex19 protein family
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| | pf:Phage_TAC_15 | |
| | pf:PhoH | PhoH-like protein
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| | pf:Pkinase | Protein kinase domain
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| | pf:Pox_E10 | E10-like protein conserved region
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| | pf:PrmA | Ribosomal protein L11 methyltransferase (PrmA)
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| | pf:RCC1 | Regulator of chromosome condensation (RCC1) repeat
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| | pf:RCC1_2 | Regulator of chromosome condensation (RCC1) repeat
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| | pf:RIO1 | RIO1 family
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| | pf:RMC1_C | |
| | pf:RMMBL | Zn-dependent metallo-hydrolase RNA specificity domain
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| | pf:RNase_J_C | |
| | pf:RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| | pf:RRM_3 | RNA binding motif
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| | pf:RRM_7 | RNA recognition motif
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| | pf:RRM_Rrp7 | |
| | pf:RRM_occluded | Occluded RNA-recognition motif
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| | pf:Reeler | Reeler domain
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| | pf:ResIII | Type III restriction enzyme, res subunit
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| | pf:Ribosomal_60s | 60s Acidic ribosomal protein
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| | pf:Ribosomal_S16 | Ribosomal protein S16
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| | pf:RmuC | RmuC family
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| | pf:S1 | S1 RNA binding domain
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| | pf:SLC52_ribofla_tr | |
| | pf:SM-ATX | Ataxin 2 SM domain
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| | pf:SWI2_SNF2 | |
| | pf:Stm1_N | Stm1
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| | pf:T2SSK | Type II secretion system (T2SS), protein K
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| | pf:T3SSipB | Type III cell invasion protein SipB
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| | pf:TFIIA | Transcription factor IIA, alpha/beta subunit
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| | pf:TPM_phosphatase | TPM domain
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| | pf:TetR_C_7 | AefR-like transcriptional repressor, C-terminal region
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| | pf:Tex_N | Tex-like protein N-terminal domain
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| | pf:Tex_YqgF | Tex protein YqgF-like domain
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| | pf:TrbC | TrbC/VIRB2 family
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| | pf:YqgF | Holliday-junction resolvase-like of SPT6
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| | pf:YwqJ-deaminase | YwqJ-like deaminase
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| | pf:eIF-3_zeta | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
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| | pf:nSTAND3 | |
| | pf:zf-C4 | Zinc finger, C4 type (two domains)
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| | pf:zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar)
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| | pf:zf-CCCH_2 | RNA-binding, Nab2-type zinc finger
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| | pf:zf-CCCH_4 | |
| | pf:zf-RanBP | Zn-finger in Ran binding protein and others
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| | pf:zf_CCCH_4 | |