Search common motifs in selected sequences


  
Motifs : pf:2-Hacid_dh_CD-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
 pf:3Beta_HSD3-beta hydroxysteroid dehydrogenase/isomerase family
 pf:3HCDH_N3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
 pf:AAA_11AAA domain
 pf:AAA_12AAA domain
 pf:AAA_14AAA domain
 pf:AAA_16AAA ATPase domain
 pf:AAA_18AAA domain
 pf:AAA_19AAA domain
 pf:AAA_22AAA domain
 pf:AAA_29P-loop containing region of AAA domain
 pf:ABC_sub_bindABC transporter substrate binding protein
 pf:ABC_tranABC transporter
 pf:AI-2E_transportAI-2E family transporter
 pf:AP_endonuc_2Xylose isomerase-like TIM barrel
 pf:AdoHcyase_NADS-adenosyl-L-homocysteine hydrolase, NAD binding domain
 pf:AlaDh_PNT_CAlanine dehydrogenase/PNT, C-terminal domain
 pf:ApbAKetopantoate reductase PanE/ApbA
 pf:AraC_bindingAraC-like ligand binding domain
 pf:B12-bindingB12 binding domain
 pf:Birna_RdRp_C
 pf:CARDBCARDB
 pf:CBM_1Fungal cellulose binding domain
 pf:CBM_5_12Carbohydrate binding domain
 pf:CHRDCHRD domain
 pf:CLP_proteaseClp protease
 pf:CMS1U3-containing 90S pre-ribosomal complex subunit
 pf:Catalase_C
 pf:CheDCheD chemotactic sensory transduction
 pf:Cleaved_AdhesinCleaved Adhesin Domain
 pf:Cu-oxidase_2Multicopper oxidase
 pf:Cupin_2Cupin domain
 pf:Cupin_3Protein of unknown function (DUF861)
 pf:DEADDEAD/DEAH box helicase
 pf:DUF2184Uncharacterized protein conserved in bacteria (DUF2184)
 pf:DUF2271Predicted periplasmic protein (DUF2271)
 pf:DUF2807Putative auto-transporter adhesin, head GIN domain
 pf:DUF2917Protein of unknown function (DUF2917)
 pf:DUF3362Domain of unknown function (DUF3362)
 pf:DUF384Domain of unknown function (DUF384)
 pf:DUF4394Domain of unknown function (DUF4394)
 pf:DUF4402Domain of unknown function (DUF4402)
 pf:DUF4971Domain of unknown function (DUF4971)
 pf:DUF6286
 pf:DUF6491
 pf:DUF6682
 pf:DZRDouble zinc ribbon
 pf:Dak2DAK2 domain
 pf:Dynamin_NDynamin family
 pf:ESPRExtended Signal Peptide of Type V secretion system
 pf:EpimeraseNAD dependent epimerase/dehydratase family
 pf:Exo_endo_phosEndonuclease/Exonuclease/phosphatase family
 pf:F420_oxidoredNADP oxidoreductase coenzyme F420-dependent
 pf:FERM_f0N-terminal or F0 domain of Talin-head FERM
 pf:FIST_CFIST C domain
 pf:FMN_bindFMN-binding domain
 pf:FakA-like_C
 pf:FakA-like_M
 pf:Flu_NS2Influenza non-structural protein (NS2)
 pf:G-patchG-patch domain
 pf:G-patch_2G-patch domain
 pf:GDP_Man_DehydGDP-mannose 4,6 dehydratase
 pf:GFO_IDH_MocAOxidoreductase family, NAD-binding Rossmann fold
 pf:GSIII_NGlutamine synthetase type III N terminal
 pf:GT4-conflict
 pf:Glyco_trans_4_4Glycosyl transferase 4-like domain
 pf:Glyco_transf_4Glycosyltransferase Family 4
 pf:Glyco_transf_5Starch synthase catalytic domain
 pf:Glycos_transf_1Glycosyl transferases group 1
 pf:HATPase_cHistidine kinase-, DNA gyrase B-, and HSP90-like ATPase
 pf:HATPase_c_3Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
 pf:HMAHeavy-metal-associated domain
 pf:HTH_19Helix-turn-helix domain
 pf:HTH_20Helix-turn-helix domain
 pf:HTH_25Helix-turn-helix domain
 pf:HTH_26Cro/C1-type HTH DNA-binding domain
 pf:HTH_3Helix-turn-helix
 pf:HTH_31Helix-turn-helix domain
 pf:HTH_37Helix-turn-helix domain
 pf:HTH_AraCBacterial regulatory helix-turn-helix proteins, AraC family
 pf:HTH_IclRIclR helix-turn-helix domain
 pf:Helicase_CHelicase conserved C-terminal domain
 pf:Helicase_RecDHelicase
 pf:HiraTUP1-like enhancer of split
 pf:HisKAHis Kinase A (phospho-acceptor) domain
 pf:IIGPInterferon-inducible GTPase (IIGP)
 pf:IlvNAcetohydroxy acid isomeroreductase, NADPH-binding domain
 pf:JacalinJacalin-like lectin domain
 pf:Lipase_GDSLGDSL-like Lipase/Acylhydrolase
 pf:Lipase_GDSL_2GDSL-like Lipase/Acylhydrolase family
 pf:MMR_HSR150S ribosome-binding GTPase
 pf:MitMem_regMaintenance of mitochondrial structure and function
 pf:MurD-like_N
 pf:MurT_C
 pf:Mur_ligase_MMur ligase middle domain
 pf:NAD_Gly3P_dh_NNAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
 pf:NAD_binding_10NAD(P)H-binding
 pf:NAD_binding_2NAD binding domain of 6-phosphogluconate dehydrogenase
 pf:N_NLPC_P60NLPC_P60 stabilising domain, N term
 pf:NmrANmrA-like family
 pf:OCRE
 pf:PAM2Ataxin-2 C-terminal region
 pf:PGM_PMM_IPhosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
 pf:POT1PCssDNA-binding domain of telomere protection protein
 pf:PRIMA1Proline-rich membrane anchor 1
 pf:Peptidase_S49Peptidase family S49
 pf:Peripla_BP_4Periplasmic binding protein domain
 pf:Phage_GPOPhage capsid scaffolding protein (GPO) serine peptidase
 pf:PhoHPhoH-like protein
 pf:Polysacc_lyasePolysaccharide lyase
 pf:Pur_ac_phosph_NPurple acid Phosphatase, N-terminal domain
 pf:Pyr_redoxPyridine nucleotide-disulphide oxidoreductase
 pf:RARas association (RalGDS/AF-6) domain
 pf:RGI_lyase
 pf:ROKROK family
 pf:RRM_1RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
 pf:Rad50_zn_hookRad50 zinc hook motif
 pf:Radical_SAMRadical SAM superfamily
 pf:Radical_SAM_NRadical SAM N-terminal
 pf:ResIIIType III restriction enzyme, res subunit
 pf:RmlD_sub_bindRmlD substrate binding domain
 pf:Rossmann-likeRossmann-like domain
 pf:RsgA_GTPase
 pf:RskAAnti-sigma-K factor rskA
 pf:SH2SH2 domain
 pf:Sacchrp_dh_NADPSaccharopine dehydrogenase NADP binding domain
 pf:Shikimate_DHShikimate / quinate 5-dehydrogenase
 pf:Sod_CuCopper/zinc superoxide dismutase (SODC)
 pf:TAT_signalTAT (twin-arginine translocation) pathway signal sequence
 pf:TPPII_Ig-like-1
 pf:TQ
 pf:TetR_NBacterial regulatory proteins, tetR family
 pf:ThiFThiF family
 pf:TrkA_NTrkA-N domain
 pf:TruB_CtRNA Pseudouridine synthase II, C terminal
 pf:UDPG_MGDP_dh_NUDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
 pf:VPS9Vacuolar sorting protein 9 (VPS9) domain
 pf:YadA_anchorYadA-like C-terminal region
 pf:YadA_headHead domain of trimeric autotransporter adhesin
 pf:YadA_stalkCoiled stalk of trimeric autotransporter adhesin
 pf:Zn_Tnp_IS1595Transposase zinc-ribbon domain
 pf:nSTAND1
 pf:zf-C2H2_4C2H2-type zinc finger
 pf:zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)
 pf:zf-RanBPZn-finger in Ran binding protein and others
 pf:zf-TFIIBTranscription factor zinc-finger

msv:Mesil_2546 pf:Sod_Cu pf:CHRD

ddr:Deide_15511 pf:CHRD pf:Pur_ac_phosph_N pf:TQ pf:Sod_Cu

cti:RALTA_B0932 pf:Sod_Cu

cnc:CNE_2c10720 pf:Sod_Cu

pan:PODANSg3990 pf:Lipase_GDSL pf:Lipase_GDSL_2 pf:CBM_1

sti:Sthe_2635 pf:RskA pf:CHRD pf:Sod_Cu

sus:Acid_0141 pf:Sod_Cu

but:X994_1733 pf:Sod_Cu

reu:Reut_B4338 pf:Pur_ac_phosph_N pf:Sod_Cu

aay:WYH_00129 pf:CHRD

btha:DR62_2070 pf:Sod_Cu


ajs:Ajs_2057 pf:DUF6491 pf:CHRD pf:Sod_Cu

bpd:BURPS668_1056 pf:Sod_Cu

bpk:BBK_515 pf:Sod_Cu

bpl:BURPS1106A_1062 pf:Sod_Cu

bpm:BURPS1710b_1214 pf:Sod_Cu

bpq:BPC006_I1052 pf:Sod_Cu

bpr:GBP346_A1054 pf:Sod_Cu

bps:BPSL1001 pf:Sod_Cu

bpsa:BBU_1178 pf:Sod_Cu

bpsd:BBX_2979 pf:Sod_Cu

bpse:BDL_1035 pf:Sod_Cu

bpsh:DR55_130 pf:Sod_Cu

bpsm:BBQ_2445 pf:Sod_Cu

bpso:X996_3199 pf:Sod_Cu

bpsu:BBN_2569 pf:Sod_Cu

bpz:BP1026B_I2537 pf:Sod_Cu

bte:BTH_I0859 pf:Sod_Cu

bthe:BTN_1869 pf:Sod_Cu

bthl:BG87_3039 pf:Sod_Cu

bthm:BTRA_3159 pf:Sod_Cu

btj:BTJ_1565 pf:Sod_Cu

btq:BTQ_876 pf:Sod_Cu

btv:BTHA_3050 pf:Sod_Cu

btz:BTL_2834 pf:Sod_Cu

dia:Dtpsy_1880 pf:DUF6491 pf:CHRD pf:Sod_Cu

btd:BTI_2828 pf:Sod_Cu

bud:AQ610_14130 pf:Sod_Cu

bul:BW21_2964 pf:Sod_Cu

gfo:GFO_1095 pf:CHRD pf:Sod_Cu pf:CHRD pf:Sod_Cu

cuv:CUREI_05520 pf:Dak2 pf:Birna_RdRp_C pf:FakA-like_M pf:FakA-like_C pf:FIST_C

dra:DR_1546 pf:Sod_Cu

aha:AHA_1290 pf:Radical_SAM_N pf:B12-binding pf:Radical_SAM pf:Polysacc_lyase pf:DUF3362

pit:PIN17_0034 pf:DUF4394 pf:DUF4394 pf:CheD pf:CARDB pf:Cleaved_Adhesin pf:RGI_lyase

sed:SeD_A1105 pf:Hira pf:DUF2184


pgr:PGTG_17002 pf:Sod_Cu

ggo:101135611 pf:RRM_1 pf:zf-RanBP pf:RRM_1 pf:OCRE pf:GSIII_N pf:zf-C2H2_4 pf:G-patch pf:G-patch_2

wcb:AO080_05460 pf:ABC_sub_bind pf:PGM_PMM_I pf:Peripla_BP_4 pf:Peripla_BP_4

dya:Dyak_GE15387 pf:SH2 pf:VPS9 pf:RA pf:FERM_f0

npn:JI59_22795 pf:Sod_Cu

eao:BD94_0022 pf:CHRD pf:Sod_Cu pf:TPPII_Ig-like-1

elb:VO54_02584 pf:CHRD pf:Sod_Cu pf:TPPII_Ig-like-1

emn:M876_17345 pf:CHRD pf:Sod_Cu pf:TPPII_Ig-like-1

lip:LI0005 pf:Sod_Cu

lir:LAW_00005 pf:Sod_Cu

cbf:CLI_1056 pf:AI-2E_transport pf:HisKA pf:Flu_NS2 pf:HATPase_c pf:HATPase_c_3

cbm:CBF_1026 pf:AI-2E_transport pf:HisKA pf:Flu_NS2 pf:HATPase_c pf:HATPase_c_3

ptq:P700755_001745 pf:CHRD pf:CHRD pf:Cu-oxidase_2

mye:AB431_04575 pf:CHRD pf:Sod_Cu pf:CHRD pf:Sod_Cu


senj:CFSAN001992_06320 pf:Hira pf:DUF2184

spri:SPRI_4662 pf:TruB_C pf:CHRD pf:CHRD

ter:Tery_4900 pf:UDPG_MGDP_dh_N pf:GFO_IDH_MocA pf:F420_oxidored pf:Shikimate_DH pf:NAD_binding_2 pf:NAD_Gly3P_dh_N pf:2-Hacid_dh_C pf:3HCDH_N pf:AlaDh_PNT_C pf:MurD-like_N pf:Rossmann-like pf:IlvN pf:ThiF pf:Pyr_redox pf:TrkA_N pf:NmrA pf:Sacchrp_dh_NADP pf:ApbA pf:AdoHcyase_NAD pf:Epimerase pf:3Beta_HSD pf:GDP_Man_Dehyd pf:NAD_binding_10 pf:Catalase_C pf:RmlD_sub_bind

ctp:CTRG_02662 pf:RRM_1

pom:MED152_04650 pf:CHRD pf:Sod_Cu

xcb:XC_0200 pf:Sod_Cu

xcc:XCC0190 pf:Sod_Cu

asu:Asuc_0800 pf:Sod_Cu

pep:AQ505_05785 pf:Glyco_transf_5 pf:Glyco_trans_4_4 pf:Glyco_transf_4 pf:Glycos_transf_1 pf:GT4-conflict

rer:RER_05770 pf:HTH_31 pf:HTH_19 pf:HTH_37 pf:HTH_25 pf:HTH_3 pf:HTH_26 pf:HTH_AraC pf:TetR_N pf:Cupin_2 pf:Cupin_3 pf:AraC_binding pf:DUF2917

sko:100369346 pf:DEAD pf:ResIII pf:CMS1 pf:Helicase_C

xcp:XCR_4337 pf:N_NLPC_P60 pf:PRIMA1 pf:Sod_Cu


fra:Francci3_2774 pf:CLP_protease pf:Peptidase_S49



strm:M444_32455 pf:Phage_GPO pf:CHRD


cak:Caul_2872 pf:Sod_Cu


dgr:Dgri_GH16935 pf:zf-CCCH pf:AAA_11 pf:ResIII pf:PhoH pf:AAA_19 pf:AAA_14 pf:AAA_22 pf:AAA_18 pf:Helicase_RecD pf:AAA_11 pf:AAA_12 pf:PAM2

lan:Lacal_1959 pf:DUF4971 pf:Sod_Cu

mag:amb0479 pf:CBM_5_12

srw:TUE45_06776 pf:Exo_endo_phos pf:POT1PC pf:Jacalin

zga:ZOBELLIA_3027 pf:DUF2271 pf:FMN_bind

bcew:DM40_5072 pf:ESPR pf:YadA_head pf:YadA_head pf:YadA_head pf:YadA_head pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_head pf:YadA_head pf:YadA_stalk pf:YadA_head pf:YadA_head pf:YadA_head pf:YadA_head pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_stalk pf:YadA_head pf:YadA_stalk pf:YadA_anchor

gdi:GDI3677 pf:DUF6682

gdj:Gdia_2563 pf:DUF6682


reb:XU06_03010 pf:HTH_31 pf:HTH_19 pf:HTH_37 pf:HTH_25 pf:HTH_3 pf:HTH_26 pf:HTH_AraC pf:TetR_N pf:Cupin_2 pf:Cupin_3 pf:AraC_binding pf:DUF2917

rey:O5Y_02755 pf:HTH_31 pf:HTH_19 pf:HTH_37 pf:HTH_25 pf:HTH_3 pf:HTH_26 pf:HTH_AraC pf:TetR_N pf:Cupin_2 pf:Cupin_3 pf:AraC_binding pf:DUF2917

rxy:Rxyl_3016 pf:Mur_ligase_M pf:Rad50_zn_hook pf:DZR pf:zf-TFIIB pf:Zn_Tnp_IS1595 pf:Mur_ligase_M pf:MurT_C

salb:XNR_0381 pf:TAT_signal pf:AP_endonuc_2

asn:102373843 pf:IIGP pf:RsgA_GTPase pf:nSTAND1 pf:AAA_16 pf:AAA_22 pf:ABC_tran pf:AAA_29 pf:Dynamin_N pf:MMR_HSR1 pf:MitMem_reg pf:DUF384


ccx:COCOR_00033 pf:DUF2807 pf:DUF4402 pf:DUF2807

cfr:102504999 pf:HMA pf:DUF6286 pf:Sod_Cu

kfl:Kfla_4870 pf:HTH_IclR pf:HTH_20 pf:ROK