SSDB Best Search Result

KEGG ID :ral:Rumal_0668 (285 a.a.)
Definition:type II site-specific deoxyribonuclease (EC:3.1.21.4); K01155 type II restriction enzyme
Update status:T01387 (abaa,abau,abk,abw,axs,babo,babr,bamy,banh,bhm,blx,bmal,bmee,bsui,bthe,bthm,ced,cem,cen,cft,cfx,cgj,cgq,cjv,echp,echv,echw,ecla,eclc,efq,kln,kom,kph,kpk,kpq,kpz,law,lsj,mak,mavr,may,maz,mbz,mcat,ngi,ocu,paea,paee,paef,paeh,paej,paen,paeq,pbd,pcp,pda,pfn,pgm,pmul,pod,prh,pste,pstt,pstu,psw,sagc,seps,sgu,smer,smia,smub,sthe,syj,synd,synk,synr,vcq,xfl,xfs,zmc : calculation not yet completed)
Show : Best-best Best Paralogs Gene clusters
Sort by : SW-score SW-score by species KEGG-species
Search against:All organisms Selected organism group
Threshold:
  

Search Result : 161 hits

                 Entry                                       KO      len   SW-score(margin)  bits  identity overlap  best(all)
------------------------------------------------------------------ -------------------------------------------------------------
esu:EUS_22060 DpnII restriction endonuclease. (EC:3.1.2            286     1586 (    -)     367    0.837    283     <-> 1
eel:EUBELI_01767 type II restriction enzyme             K01155     287     1413 (    -)     328    0.721    283     <-> 1
ert:EUR_02470 DpnII restriction endonuclease. (EC:3.1.2            285     1410 (    -)     327    0.735    283     <-> 1
scc:Spico_0553 type II site-specific deoxyribonuclease             285     1401 (    -)     325    0.717    283     <-> 1
fnc:HMPREF0946_02035 hypothetical protein                          285     1340 (    -)     311    0.707    283     <-> 1
tsu:Tresu_1694 type II site-specific deoxyribonuclease             286     1340 (    -)     311    0.681    285     <-> 1
ssg:Selsp_0626 Type II site-specific deoxyribonuclease  K01155     328     1322 (    -)     307    0.693    290     <-> 1
csr:Cspa_c40500 type-2 restriction enzyme DpnII (EC:3.1            283     1316 (    -)     306    0.677    285     <-> 1
bsa:Bacsa_2065 type II site-specific deoxyribonuclease             292     1274 (    -)     296    0.657    283     <-> 1
bvs:BARVI_06925 type II restriction endonuclease                   285     1241 (    -)     289    0.647    283     <-> 1
med:MELS_0976 type II site-specific deoxyribonuclease   K01155     284     1189 (    -)     277    0.623    284     <-> 1
mcu:HMPREF0573_11642 type II site-specific deoxyribonuc K01155     296     1053 (    -)     246    0.532    293     <-> 1
snm:SP70585_1903 type II restriction enzyme (EC:3.1.21. K01155     288     1041 (    -)     243    0.530    283     <-> 1
spng:HMPREF1038_01817 type II restriction enzyme DpnII             288     1041 (    -)     243    0.530    283     <-> 1
spp:SPP_1848 type II restriction enzyme (EC:3.1.21.4)   K01155     288     1041 (  936)     243    0.530    283     <-> 2
spx:SPG_1733 DpnII endonuclease (EC:3.1.21.4)           K01155     288     1041 (  936)     243    0.530    283     <-> 2
snb:SP670_1923 type II restriction enzyme DpnII (EC:3.1 K01155     288     1037 (    -)     242    0.530    283     <-> 1
snp:SPAP_1844 hypothetical protein                      K01155     288     1037 (    -)     242    0.530    283     <-> 1
spv:SPH_1964 type II restriction enzyme DpnII (EC:3.1.2 K01155     288     1037 (    -)     242    0.530    283     <-> 1
mss:MSU_0849 type II restriction enzyme DpnII (EC:3.1.2            286     1001 (    -)     234    0.507    286     <-> 1
sni:INV104_15870 Type II restriction enzyme                        275      998 (    -)     233    0.533    272     <-> 1
tat:KUM_0834 Type II restriction endonuclease                      293      940 (    -)     220    0.481    291     <-> 1
mmo:MMOB3440 type II restriction enzyme DpnII (EC:3.1.2 K01155     297      884 (    -)     207    0.476    296     <-> 1
ssk:SSUD12_0038 restriction endonuclease                           308      818 (  229)     192    0.422    301     <-> 2
ssq:SSUD9_0036 type II site-specific deoxyribonuclease             308      817 (  220)     192    0.425    301     <-> 2
sst:SSUST3_0037 type II site-specific deoxyribonuclease            308      817 (  220)     192    0.425    301     <-> 2
ssuy:YB51_0180 Type II restriction enzyme MjaIII (EC:3.            308      817 (  220)     192    0.425    301     <-> 2
mfm:MfeM64YM_0146 type ii restriction enzyme dpnii                 285      757 (    -)     178    0.404    285     <-> 1
acl:ACL_1082 type II site-specific deoxyribonuclease (E K01155     283      745 (    -)     176    0.415    287     <-> 1
mfp:MBIO_0191 hypothetical protein                                 292      745 (    -)     176    0.400    285     <-> 1
apal:BN85400320 Type II site-specific deoxyribonuclease            288      707 (    -)     167    0.398    284     <-> 1
gst:HW35_01470 Type II restriction endonuclease BstXII             310      692 (    -)     164    0.399    291     <-> 1
cth:Cthe_1512 Type II site-specific deoxyribonuclease ( K01155     310      661 (  542)     157    0.371    291     <-> 2
ctx:Clo1313_2274 type II site-specific deoxyribonucleas            310      661 (  542)     157    0.371    291     <-> 2
mok:Metok_0256 type II site-specific deoxyribonuclease  K01155     290      643 (    -)     152    0.375    291     <-> 1
mja:MJ_0600 type II R/M system restriction enzyme 2     K01155     290      638 (    -)     151    0.351    291     <-> 1
tli:Tlie_0307 type II site-specific deoxyribonuclease   K01155     300      637 (    -)     151    0.383    287     <-> 1
cpo:COPRO5265_1446 type II restriction enzyme R protein K01155     310      623 (    -)     148    0.354    291     <-> 1
rae:G148_1739 hypothetical protein                                 279      616 (    -)     146    0.367    283     <-> 1
rag:B739_0012 hypothetical protein                                 279      616 (    -)     146    0.367    283     <-> 1
rai:RA0C_0017 type ii site-specific deoxyribonuclease              279      616 (    -)     146    0.367    283     <-> 1
ran:Riean_1818 type ii site-specific deoxyribonuclease  K01155     279      616 (    -)     146    0.367    283     <-> 1
rar:RIA_0344 DpmII restriction endonuclease                        279      616 (    -)     146    0.367    283     <-> 1
rat:M949_0441 type ii site-specific deoxyribonuclease              279      616 (    -)     146    0.367    283     <-> 1
smb:smi_0526 type II restriction enzyme DPNII homolog ( K01155     302      611 (    -)     145    0.373    292     <-> 1
dte:Dester_0101 type II site-specific deoxyribonuclease K01155     300      605 (    -)     144    0.362    287     <-> 1
cha:CHAB381_1228 restriction endonuclease R.IB          K01155     273      601 (    -)     143    0.374    281     <-> 1
ant:Arnit_2984 type II site-specific deoxyribonuclease  K01155     292      593 (    -)     141    0.363    295     <-> 1
pdt:Prede_2009 DpnII restriction endonuclease                      277      583 (    -)     139    0.362    276     <-> 1
mfr:MFE_01240 type II restriction enzyme (EC:3.1.21.4)             217      582 (    -)     139    0.424    217     <-> 1
mpv:PRV_00245 hypothetical protein                                 165      582 (    -)     139    0.550    151     <-> 1
ssa:SSA_1716 restriction endonuclease SsuRB (EC:3.1.21. K01155     308      581 (    -)     138    0.369    282     <-> 1
sapi:SAPIS_v1c04340 type II restriction enzyme                     282      580 (    -)     138    0.336    286     <-> 1
tme:Tmel_0307 Type II site-specific deoxyribonuclease ( K01155     272      579 (    -)     138    0.340    282     <-> 1
hpe:HPELS_00475 type II restriction enzyme R protein (h            276      523 (    -)     125    0.335    281     <-> 1
hpyu:K751_07180 type II restriction endonuclease MboI              277      520 (    -)     124    0.327    281     <-> 1
hcn:HPB14_00445 type II restriction enzyme R protein (h            276      515 (    -)     123    0.336    280     <-> 1
hei:C730_00445 type II restriction enzyme R protein (hs            277      511 (    -)     122    0.339    280     <-> 1
heo:C694_00445 type II restriction enzyme R protein (hs            277      511 (    -)     122    0.339    280     <-> 1
her:C695_00445 type II restriction enzyme R protein (hs            277      511 (    -)     122    0.339    280     <-> 1
hpy:HP0091 type II restriction enzyme R protein HsdR    K01155     277      511 (    -)     122    0.339    280     <-> 1
hpn:HPIN_00435 type II restriction enzyme R protein (hs            277      506 (    -)     121    0.320    275     <-> 1
hpz:HPKB_0104 type II restriction enzyme R protein (hsd            277      504 (    -)     121    0.324    281     <-> 1
hey:MWE_0183 type II restriction enzyme R protein (HsdR            277      503 (    -)     121    0.320    281     <-> 1
hpyk:HPAKL86_01620 type II restriction enzyme R protein            277      502 (    -)     120    0.329    280     <-> 1
tit:Thit_0486 type II site-specific deoxyribonuclease ( K01155     307      501 (    -)     120    0.316    288     <-> 1
hbi:HBZC1_18460 type II restriction enzyme MjaIII (EC:3            278      499 (    -)     120    0.331    281     <-> 1
hhp:HPSH112_00440 type II restriction enzyme R protein             277      497 (    -)     119    0.317    281     <-> 1
hpyl:HPOK310_0104 Type II restriction enzyme protein               276      497 (    -)     119    0.320    281     <-> 1
heb:U063_0435 Type II restriction enzyme MjaIII (EC:3.1            252      496 (    -)     119    0.332    259     <-> 1
hez:U064_0436 Type II restriction enzyme MjaIII (EC:3.1            252      496 (    -)     119    0.332    259     <-> 1
tbo:Thebr_1821 type II site-specific deoxyribonuclease             307      494 (    -)     118    0.322    292     <-> 1
tex:Teth514_0459 type II site-specific deoxyribonucleas K01155     307      494 (    -)     118    0.322    292     <-> 1
thx:Thet_0507 Type II site-specific deoxyribonuclease ( K01155     307      494 (    -)     118    0.322    292     <-> 1
tpd:Teth39_1776 type II site-specific deoxyribonuclease K01155     307      494 (    -)     118    0.322    292     <-> 1
hes:HPSA_00475 type II restriction enzyme R protein (hs            296      493 (    -)     118    0.320    281     <-> 1
hef:HPF16_0104 Type II restriction enzyme protein                  277      492 (    -)     118    0.317    281     <-> 1
hem:K748_03515 type II restriction endonuclease MboI               277      492 (    -)     118    0.313    281     <-> 1
hpym:K749_05095 type II restriction endonuclease MboI              277      492 (    -)     118    0.313    281     <-> 1
fpe:Ferpe_1710 DpnII restriction endonuclease                      312      491 (    -)     118    0.325    292     <-> 1
heu:HPPN135_00465 type II restriction enzyme R protein             277      490 (    -)     118    0.309    275     <-> 1
hhm:BN341_p1478 Type II restriction enzyme MjaIII (EC:3            284      490 (    -)     118    0.327    281     <-> 1
hpf:HPF30_1170 Type II restriction enzyme protein                  277      490 (    -)     118    0.317    281     <-> 1
hpt:HPSAT_00425 type II restriction enzyme R protein (h            277      490 (    -)     118    0.325    280     <-> 1
hhq:HPSH169_00435 type II restriction enzyme R protein             277      487 (    -)     117    0.310    281     <-> 1
hpu:HPCU_00425 type II restriction enzyme R protein (hs            277      486 (    -)     117    0.310    281     <-> 1
meb:Abm4_1017 type II restriction endonuclease                     295      481 (    -)     115    0.327    294     <-> 1
hhr:HPSH417_00435 type II restriction enzyme R protein             277      477 (    -)     115    0.309    275     <-> 1
hfe:HFELIS_11740 Type II restriction enzyme R protein (            272      475 (    -)     114    0.313    284     <-> 1
hpyo:HPOK113_0103 Type II restriction enzyme protein               275      470 (    -)     113    0.310    281     <-> 1
mst:Msp_0144 type II restriction-modification system, r K01155     286      456 (    -)     110    0.317    287     <-> 1
hpp:HPP12_0094 type II R-M system restriction endonucle K01155     258      452 (    -)     109    0.332    253     <-> 1
meth:MBMB1_0502 type II restriction-modification system            292      435 (   10)     105    0.339    283     <-> 2
thb:N186_01200 hypothetical protein                                302      428 (    -)     103    0.351    276     <-> 1
dth:DICTH_1799 type II restriction enzyme DpnII (EC:3.1 K01155     296      405 (    -)      98    0.304    296     <-> 1
hpg:HPG27_84 type II restriction enzyme protein         K01155     237      404 (    -)      98    0.311    244     <-> 1
lge:C269_06475 putative type II restriction endonucleas            306      372 (    -)      91    0.279    297     <-> 1
smc:SmuNN2025_1466 type II restriction endonuclease     K01155     312      372 (    -)      91    0.296    294     <-> 1
smj:SMULJ23_1485 putative type II restriction endonucle            312      372 (    -)      91    0.296    294     <-> 1
smut:SMUGS5_02195 type II restriction endonuclease                 312      372 (    -)      91    0.296    294     <-> 1
sad:SAAV_0819 DNA adenine methylase                     K01155     322      370 (    -)      90    0.285    267     <-> 1
hcp:HCN_1176 hypothetical protein                                  143      369 (    -)      90    0.430    149     <-> 1
saua:SAAG_02518 DNA adenine methylase                   K06223     553      369 (    -)      90    0.285    267      -> 1
hpd:KHP_0095 type II restriction endonuclease                      221      368 (    -)      90    0.348    227     <-> 1
hcb:HCBAA847_0792 hypothetical protein                             143      367 (    -)      90    0.430    149     <-> 1
smu:SMU_506 type II restriction endonuclease            K01155     312      367 (    -)      90    0.293    294     <-> 1
mbv:MBOVPG45_0560 type II restriction endonuclease                 308      366 (    -)      89    0.287    272     <-> 1
mcd:MCRO_0752 type II restriction endonuclease (EC:3.1. K01155     310      362 (    -)      88    0.267    307     <-> 1
mal:MAGa2710 type II restriction endonuclease           K01155     309      361 (    -)      88    0.287    272     <-> 1
chy:CHY_2211 type II restriction endonuclease           K01155     315      350 (    -)      86    0.297    293     <-> 1
mhn:MHP168_630 DNA adenine methylase                    K06223     549      297 (    -)      74    0.283    272      -> 1
mhyl:MHP168L_630 DNA adenine methylase                  K06223     549      297 (    -)      74    0.283    272      -> 1
heq:HPF32_0102 Type II restriction enzyme protein                  199      288 (   78)      71    0.290    200     <-> 2
mhy:mhp641 DNA adenine methylase                        K06223     549      287 (    -)      71    0.272    272      -> 1
mhj:MHJ_0623 DNA adenine methylase (EC:2.1.1.72)        K06223     549      286 (    -)      71    0.272    272      -> 1
mhp:MHP7448_0622 DNA adenine methylase (EC:2.1.1.72)    K06223     549      283 (    -)      70    0.272    272      -> 1
mhyo:MHL_2964 DNA adenine methylase                     K06223     549      283 (    -)      70    0.272    272      -> 1
hpo:HMPREF4655_20363 type II site-specific deoxyribonuc            180      266 (    -)      66    0.315    168     <-> 1
maa:MAG_2580 hypothetical protein                                  149      217 (    -)      55    0.292    137     <-> 1
hce:HCW_01250 type II site-specific deoxyribonuclease               73      195 (    -)      50    0.411    73      <-> 1
fpo:FPG3_11385 hypothetical protein                                463      119 (    -)      33    0.304    79      <-> 1
ngr:NAEGRDRAFT_56635 hypothetical protein                          393      119 (    -)      33    0.308    117     <-> 1
pmum:103328726 pentatricopeptide repeat-containing prot            785      112 (    -)      31    0.318    107     <-> 1
smf:Smon_1508 hypothetical protein                                 533      111 (    -)      31    0.306    124      -> 1
cno:NT01CX_0950 lipoprotein                                        188      110 (    -)      31    0.354    99      <-> 1
cbn:CbC4_0385 glycogen/starch/alpha-glucan phosphorylas K00688     812      108 (    -)      30    0.343    70       -> 1
sig:N596_03415 helicase SNF2                                      2077      108 (    -)      30    0.330    103      -> 1
tps:THAPSDRAFT_1341 hypothetical protein                           661      108 (    -)      30    0.300    100      -> 1
csb:CLSA_c00690 Xaa-Pro aminopeptidase PepP (EC:3.4.11. K01262     414      107 (    -)      30    0.303    66       -> 1
pper:PRUPE_ppa026586mg hypothetical protein                        453      107 (    -)      30    0.309    94      <-> 1
ddf:DEFDS_0187 ABC transporter substrate-binding protei K01989     308      106 (    -)      30    0.333    84      <-> 1
llk:LLKF_2007 XRE family transcriptional regulator                 228      106 (    -)      30    0.338    80       -> 1
scf:Spaf_1117 SNF2 family protein                                 2079      105 (    -)      30    0.320    103      -> 1
siu:SII_0656 SNF2 family protein                                  2070      105 (    -)      30    0.320    103      -> 1
taf:THA_322 CRISPR-associated protein Cas1                         327      105 (    -)      30    0.319    69       -> 1
ast:Asulf_01288 putative transcriptional regulator                 116      104 (    -)      30    0.304    102     <-> 1
cad:Curi_c01660 cell surface receptor IPT/TIG and fibro           1892      104 (    -)      30    0.311    74       -> 1
dpe:Dper_GL11676 GL11676 gene product from transcript G            421      104 (    -)      30    0.333    96      <-> 1
lcm:102351893 nicalin                                              498      104 (    -)      30    0.319    72      <-> 1
mmg:MTBMA_c04420 archaeal nitrogenase iron-molybdenum c K02585     288      104 (    -)      30    0.303    152      -> 1
pjd:Pjdr2_1668 sensor with HAMP domain                             580      104 (    -)      30    0.317    101      -> 1
abl:A7H1H_1722 uroporphyrinogen decarboxylase (EC:4.1.1 K01599     346      103 (    -)      29    0.342    111     <-> 1
abt:ABED_1616 uroporphyrinogen decarboxylase            K01599     346      103 (    -)      29    0.342    111     <-> 1
abu:Abu_1786 uroporphyrinogen decarboxylase (EC:4.1.1.3 K01599     346      103 (    -)      29    0.342    111     <-> 1
vsa:VSAL_I2287 chemotaxis protein CheA (EC:2.7.3.-)     K03407     723      103 (    -)      29    0.330    94       -> 1
arc:ABLL_2279 uroporphyrinogen decarboxylase            K01599     346      102 (    -)      29    0.342    111     <-> 1
ddi:DDB_G0273285 hypothetical protein                   K14310    1916      102 (    0)      29    0.319    69       -> 2
bacc:BRDCF_08230 hypothetical protein                   K12524     809      101 (    -)      29    0.320    75       -> 1
cdu:CD36_27530 peroxisomal matrix lipase, putative                 401      101 (    -)      29    0.326    92       -> 1
cnc:CNE_2c03620 NmrA family protein                                293      101 (    -)      29    0.315    54       -> 1
eoi:ECO111_p2-038 major tail tube protein                          203      101 (    -)      29    0.426    47      <-> 1
spu:593169 serine/threonine-protein phosphatase 6 regul           1408      101 (    -)      29    0.341    85       -> 1
tru:101079996 nicalin-1-like                                       576      101 (    -)      29    0.306    72      <-> 1
aje:HCAG_06808 hypothetical protein                     K15339     826      100 (    -)      29    0.436    55      <-> 1
fae:FAES_5185 peptidase M16 domain protein              K07263     948      100 (    -)      29    0.352    91       -> 1
fpl:Ferp_2133 phenylalanyl-tRNA synthetase subunit beta K01890     547      100 (    -)      29    0.302    86       -> 1
laa:WSI_01575 hypothetical protein                                 311      100 (    -)      29    0.301    103     <-> 1
las:CLIBASIA_01665 hypothetical protein                            311      100 (    -)      29    0.301    103     <-> 1
pya:PYCH_15060 peptidase, M28 family                               557      100 (    -)      29    0.375    64      <-> 1
rsi:Runsl_4225 dipeptidyl-peptidase IV                  K01278     744      100 (    -)      29    0.338    77      <-> 1
scm:SCHCODRAFT_104716 hypothetical protein                         483      100 (    -)      29    0.326    92      <-> 1

[ SSDB | GENES | KEGG2 | KEGG | GenomeNet ]