| Motif id | From | To | Definition | E value | Score |
| pf:HTH_1 | 4 | 62 | Bacterial regulatory helix-turn-helix protein, lysR family
| 4.4e-19 | - |
| pf:MarR | 4 | 53 | MarR family
| 0.0063 | - |
| pf:HTH_20 | 4 | 41 | Helix-turn-helix domain
| 0.024 | - |
| pf:HTH_28 | 6 | 45 | Helix-turn-helix domain
| 0.0063 | - |
| pf:HTH_23 | 6 | 38 | Homeodomain-like domain
| 0.017 | - |
| pf:HTH_38 | 7 | 37 | Helix-turn-helix domain
| 0.56 | - |
| pf:HTH_Tnp_ISL3 | 8 | 33 | Helix-turn-helix domain of transposase family ISL3
| 0.84 | - |
| pf:HTH_50 | 8 | 34 | | 0.1 | - |
| pf:HTH_5 | 10 | 41 | Bacterial regulatory protein, arsR family
| 0.0012 | - |
| pf:HTH_30 | 12 | 47 | PucR C-terminal helix-turn-helix domain
| 0.11 | - |
| pf:P22_Cro | 16 | 61 | DNA-binding transcriptional regulator Cro
| 0.28 | - |
| pf:HTH_IclR | 17 | 41 | IclR helix-turn-helix domain
| 0.47 | - |
| pf:HTH_24 | 19 | 41 | Winged helix-turn-helix DNA-binding
| 0.011 | - |
| pf:Cro | 20 | 38 | Cro
| 0.2 | - |
| pf:MarR_2 | 22 | 42 | MarR family
| 0.065 | - |
| pf:HTH_11 | 22 | 51 | HTH domain
| 0.21 | - |
| pf:LysR_substrate | 87 | 291 | LysR substrate binding domain
| 5.5e-40 | - |