| Motif id | From | To | Definition | E value | Score |
| pf:DNA_ligase_A_N | 1 | 188 | DNA ligase N terminus
| 9.7e-50 | - |
| pf:DNA_ligase_A_M | 239 | 439 | ATP dependent DNA ligase domain
| 3.1e-58 | - |
| pf:FlpD | 403 | 429 | Methyl-viologen-reducing hydrogenase, delta subunit
| 0.58 | - |
| pf:DNA_ligase_A_C | 464 | 573 | ATP dependent DNA ligase C terminal region
| 1.6e-26 | - |