| Motif id | From | To | Definition | E value | Score |
| pf:PPR_2 | 127 | 174 | PPR repeat family
| 3.9e-07 | - |
| pf:PPR | 129 | 159 | PPR repeat
| 2.3e-05 | - |
| pf:PPR_1 | 226 | 252 | PPR repeat
| 0.78 | - |
| pf:PPR_2 | 227 | 276 | PPR repeat family
| 2.7e-07 | - |
| pf:PPR | 231 | 257 | PPR repeat
| 0.00012 | - |
| pf:PPR_long | 247 | 362 | Pentacotripeptide-repeat region of PROPR
| 0.38 | - |
| pf:PPR_3 | 259 | 312 | Pentatricopeptide repeat domain
| 0.38 | - |
| pf:PPR_2 | 299 | 330 | PPR repeat family
| 0.012 | - |
| pf:PPR | 304 | 330 | PPR repeat
| 0.0035 | - |
| pf:PPR_1 | 304 | 326 | PPR repeat
| 0.14 | - |
| pf:PPR_2 | 329 | 372 | PPR repeat family
| 2.9e-08 | - |
| pf:PPR_1 | 330 | 358 | PPR repeat
| 2.1e-06 | - |
| pf:PPR_3 | 330 | 361 | Pentatricopeptide repeat domain
| 0.043 | - |
| pf:PPR | 332 | 361 | PPR repeat
| 2.1e-09 | - |
| pf:PPR_2 | 399 | 427 | PPR repeat family
| 0.34 | - |
| pf:PPR | 401 | 424 | PPR repeat
| 0.029 | - |
| pf:PPR_long | 409 | 483 | Pentacotripeptide-repeat region of PROPR
| 0.25 | - |
| pf:PPR_2 | 427 | 474 | PPR repeat family
| 4.6e-13 | - |
| pf:PPR_1 | 427 | 455 | PPR repeat
| 0.00039 | - |
| pf:PPR_3 | 427 | 475 | Pentatricopeptide repeat domain
| 9.5e-07 | - |
| pf:PPR | 429 | 459 | PPR repeat
| 1.8e-09 | - |
| pf:PPR_1 | 494 | 524 | PPR repeat
| 0.00089 | - |
| pf:PPR | 501 | 525 | PPR repeat
| 0.00093 | - |
| pf:E_motif | 550 | 607 | | 6e-10 | - |