| Motif id | From | To | Definition | E value | Score |
| pf:LigD_N | 52 | 160 | | 3.1e-43 | - |
| pf:DNA_ligase_A_M | 287 | 468 | ATP dependent DNA ligase domain
| 3.4e-26 | - |
| pf:DNA_ligase_A_C | 487 | 582 | ATP dependent DNA ligase C terminal region
| 2.6e-29 | - |
| pf:MBF1 | 584 | 623 | Multiprotein bridging factor 1
| 0.55 | - |
| pf:DNA_primase_S | 780 | 901 | Eukaryotic and archaeal DNA primase small subunit
| 5.3e-09 | - |