| Motif id | From | To | Definition | E value | Score |
| pf:CPSase_sm_chain | 50 | 184 | Carbamoyl-phosphate synthase small chain, CPSase domain
| 2e-45 | - |
| pf:GATase | 260 | 435 | Glutamine amidotransferase class-I
| 1.4e-51 | - |
| pf:Peptidase_C26 | 313 | 345 | Peptidase C26
| 0.00077 | - |
| pf:CPSase_L_D2 | 587 | 783 | Carbamoyl-phosphate synthase L chain, ATP binding domain
| 5.5e-71 | - |
| pf:ATP-grasp | 599 | 737 | ATP-grasp domain
| 7.4e-06 | - |
| pf:Dala_Dala_lig_C | 615 | 755 | D-ala D-ala ligase C-terminus
| 2.4e-05 | - |
| pf:CPSase_L_D3 | 868 | 941 | Carbamoyl-phosphate synthetase large chain, oligomerisation domain
| 2.4e-25 | - |
| pf:TrkA_N | 1019 | 1123 | TrkA-N domain
| 0.68 | - |
| pf:RimK | 1107 | 1226 | RimK-like ATP-grasp domain
| 0.26 | - |
| pf:ATP-grasp_3 | 1107 | 1280 | ATP-grasp domain
| 0.066 | - |
| pf:CPSase_L_D2 | 1110 | 1309 | Carbamoyl-phosphate synthase L chain, ATP binding domain
| 4.5e-31 | - |
| pf:GARS_A | 1115 | 1209 | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
| 0.18 | - |
| pf:ATP-grasp | 1118 | 1280 | ATP-grasp domain
| 1.8e-07 | - |
| pf:Dala_Dala_lig_C | 1124 | 1278 | D-ala D-ala ligase C-terminus
| 2e-09 | - |
| pf:ATPgrasp_Ter | 1243 | 1314 | ATP-grasp in the biosynthetic pathway with Ter operon
| 0.00063 | - |
| pf:MGS | 1390 | 1488 | MGS-like domain
| 2e-19 | - |
| pf:OTCace_N | 1912 | 2052 | Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
| 1.4e-46 | - |
| pf:OTCace | 2060 | 2209 | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
| 1.9e-30 | - |
| pf:Isochorismatase | 2102 | 2162 | Isochorismatase family
| 0.62 | - |