SSDB Motif Search Result


Organism : Calditerrivibrio nitroreducens
Gene : Calni_0428
Definition : K01155 type II restriction enzyme [EC:3.1.21.4] | (GenBank) Type II site-specific deoxyribonuclease
Motif idFromToDefinitionE valueScore
pf:DpnI3256Dam-replacing family 5.3e-122-
pf:zinc-ribbons_63073zinc-ribbons 0.0013-
pf:YppF3048YppF-like protein 0.93-
pf:DZR3267Double zinc ribbon 0.014-
pf:Zn_Tnp_IS15953462Transposase zinc-ribbon domain 0.3-
pf:zf-ribbon_33545zinc-ribbon domain 0.17-
pf:zinc_ribbon_23544zinc-ribbon domain 0.066-
pf:OrfB_Zn_ribbon3564Putative transposase DNA-binding domain 0.16-
pf:Zn_ribbon_SprT3567 0.13-
pf:TF_Zn_Ribbon3560TFIIB zinc-binding 1-
pf:RNA_POL_M_15KD3666RNA polymerases M/15 Kd subunit 0.076-
pf:DUF21974871Uncharacterized protein conserved in bacteria (DUF2197) 0.26-

cni:Calni_0428 pf:DpnI pf:zinc-ribbons_6 pf:YppF pf:DZR pf:Zn_Tnp_IS1595 pf:zf-ribbon_3 pf:zinc_ribbon_2 pf:OrfB_Zn_ribbon pf:Zn_ribbon_SprT pf:TF_Zn_Ribbon pf:RNA_POL_M_15KD pf:DUF2197

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