SSDB Motif Search Result
Organism :
Calditerrivibrio nitroreducens
Gene :
Calni_0428
Definition :
K01155 type II restriction enzyme [EC:3.1.21.4] | (GenBank) Type II site-specific deoxyribonuclease
Motif id
From
To
Definition
E value
Score
pf:DpnI
3
256
Dam-replacing family
5.3e-122
-
pf:zinc-ribbons_6
30
73
zinc-ribbons
0.0013
-
pf:YppF
30
48
YppF-like protein
0.93
-
pf:DZR
32
67
Double zinc ribbon
0.014
-
pf:Zn_Tnp_IS1595
34
62
Transposase zinc-ribbon domain
0.3
-
pf:zf-ribbon_3
35
45
zinc-ribbon domain
0.17
-
pf:zinc_ribbon_2
35
44
zinc-ribbon domain
0.066
-
pf:OrfB_Zn_ribbon
35
64
Putative transposase DNA-binding domain
0.16
-
pf:Zn_ribbon_SprT
35
67
0.13
-
pf:TF_Zn_Ribbon
35
60
TFIIB zinc-binding
1
-
pf:RNA_POL_M_15KD
36
66
RNA polymerases M/15 Kd subunit
0.076
-
pf:DUF2197
48
71
Uncharacterized protein conserved in bacteria (DUF2197)
0.26
-
[
GENES
|
KEGG2
|
KEGG
|
GenomeNet
]