| Motif id | From | To | Definition | E value | Score |
| pf:CPSase_sm_chain | 8 | 146 | Carbamoyl-phosphate synthase small chain, CPSase domain
| 1.3e-45 | - |
| pf:GATase | 192 | 366 | Glutamine amidotransferase class-I
| 2e-48 | - |
| pf:DJ-1_PfpI | 219 | 272 | DJ-1/PfpI family
| 0.033 | - |
| pf:Peptidase_C26 | 254 | 282 | Peptidase C26
| 0.0037 | - |
| pf:CPSase_L_D2 | 515 | 718 | Carbamoyl-phosphate synthase L chain, ATP binding domain
| 1e-80 | - |
| pf:ATP-grasp | 527 | 673 | ATP-grasp domain
| 0.00034 | - |
| pf:Dala_Dala_lig_C | 545 | 686 | D-ala D-ala ligase C-terminus
| 3.8e-05 | - |
| pf:ATPgrasp_Ter | 649 | 718 | ATP-grasp in the biosynthetic pathway with Ter operon
| 0.0011 | - |
| pf:CPSase_L_D3 | 803 | 879 | Carbamoyl-phosphate synthetase large chain, oligomerisation domain
| 1.8e-28 | - |
| pf:ATP-grasp_3 | 1047 | 1220 | ATP-grasp domain
| 0.0055 | - |
| pf:ATP-grasp | 1059 | 1220 | ATP-grasp domain
| 5.8e-09 | - |
| pf:CPSase_L_D2 | 1070 | 1247 | Carbamoyl-phosphate synthase L chain, ATP binding domain
| 5.1e-23 | - |
| pf:Dala_Dala_lig_C | 1073 | 1216 | D-ala D-ala ligase C-terminus
| 1.2e-05 | - |
| pf:ATPgrasp_Ter | 1132 | 1224 | ATP-grasp in the biosynthetic pathway with Ter operon
| 0.0069 | - |
| pf:MGS | 1328 | 1430 | MGS-like domain
| 4.3e-17 | - |
| pf:Amidohydro_1 | 1465 | 1523 | Amidohydrolase family
| 6.4e-09 | - |
| pf:OTCace_N | 1914 | 2056 | Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
| 3.1e-44 | - |
| pf:OTCace | 2063 | 2211 | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
| 4.6e-34 | - |