| Motif id | From | To | Definition | E value | Score |
| pf:DNA_ligase_A_N | 13 | 185 | DNA ligase N terminus
| 9.3e-39 | - |
| pf:Sda | 144 | 168 | Sporulation inhibitor A
| 0.0053 | - |
| pf:DNA_ligase_A_M | 235 | 429 | ATP dependent DNA ligase domain
| 4.6e-59 | - |
| pf:mRNA_cap_enzyme | 340 | 398 | mRNA capping enzyme, catalytic domain
| 0.016 | - |
| pf:DNA_ligase_A_C | 457 | 566 | ATP dependent DNA ligase C terminal region
| 1.2e-18 | - |
| pf:EAF | 646 | 759 | RNA polymerase II transcription elongation factor
| 0.11 | - |