| Motif id | From | To | Definition | E value | Score |
| pf:DNA_ligase_A_N | 281 | 457 | DNA ligase N terminus
| 1.9e-36 | - |
| pf:DDR | 405 | 482 | Diol dehydratase reactivase ATPase-like domain
| 0.014 | - |
| pf:DNA_ligase_A_M | 535 | 739 | ATP dependent DNA ligase domain
| 1.8e-67 | - |
| pf:PucR | 682 | 720 | Purine catabolism regulatory protein-like family
| 0.4 | - |
| pf:DNA_ligase_A_C | 764 | 875 | ATP dependent DNA ligase C terminal region
| 4.8e-24 | - |