| Motif id | From | To | Definition | E value | Score |
| pf:CheR_N | 26 | 74 | CheR methyltransferase, all-alpha domain
| 2.4e-10 | - |
| pf:CheR | 91 | 278 | CheR methyltransferase, SAM binding domain
| 1.1e-47 | - |
| pf:PMR5N | 399 | 431 | PMR5 N terminal Domain
| 0.58 | - |
| pf:UPF0449 | 432 | 491 | Uncharacterised protein family UPF0449
| 0.61 | - |
| pf:BLOC1S3 | 448 | 526 | Biogenesis of lysosome-related organelles complex 1 subunit 3
| 0.0041 | - |
| pf:IFT57 | 451 | 542 | Intra-flagellar transport protein 57
| 0.01 | - |
| pf:Exonuc_VII_L | 451 | 543 | Exonuclease VII, large subunit
| 0.06 | - |
| pf:NBP1 | 455 | 501 | Fungal Nap binding protein NBP1
| 0.066 | - |
| pf:HMMR_N | 457 | 547 | Hyaluronan mediated motility receptor N-terminal
| 0.11 | - |
| pf:ADIP | 460 | 541 | Afadin- and alpha -actinin-Binding
| 0.089 | - |
| pf:Fez1 | 460 | 537 | Fez1
| 0.56 | - |
| pf:PAS_10 | 540 | 644 | PAS domain
| 5.1e-24 | - |
| pf:PAS | 540 | 644 | PAS fold
| 0.091 | - |
| pf:PAS_4 | 545 | 648 | PAS fold
| 1.1e-08 | - |
| pf:PAS_9 | 548 | 645 | PAS domain
| 0.00052 | - |
| pf:PAS_7 | 548 | 651 | PAS fold
| 0.25 | - |
| pf:EcoEI_R_C | 572 | 636 | EcoEI R protein C-terminal
| 0.27 | - |
| pf:PAS_8 | 677 | 730 | PAS domain
| 0.0004 | - |
| pf:PAS | 678 | 786 | PAS fold
| 2.4e-09 | - |
| pf:PAS_4 | 684 | 792 | PAS fold
| 3.7e-09 | - |
| pf:PAS_9 | 700 | 789 | PAS domain
| 2.3e-11 | - |
| pf:PAS_3 | 700 | 778 | PAS fold
| 0.00017 | - |
| pf:HisKA | 810 | 875 | His Kinase A (phospho-acceptor) domain
| 8.9e-22 | - |
| pf:HATPase_c | 923 | 1037 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
| 7.4e-31 | - |
| pf:Response_reg | 1062 | 1175 | Response regulator receiver domain
| 5.3e-25 | - |