| Motif id | From | To | Definition | E value | Score |
| pf:LigD_N | 2 | 104 | | 2e-41 | - |
| pf:DNA_ligase_A_M | 239 | 409 | ATP dependent DNA ligase domain
| 6e-26 | - |
| pf:DNA_ligase_A_C | 425 | 519 | ATP dependent DNA ligase C terminal region
| 9.5e-22 | - |
| pf:Hjc | 614 | 676 | Archaeal holliday junction resolvase (hjc)
| 0.33 | - |
| pf:DNA_primase_S | 695 | 820 | Eukaryotic and archaeal DNA primase small subunit
| 0.09 | - |