| Motif id | From | To | Definition | E value | Score |
| pf:SET | 218 | 324 | SET domain
| 1.7e-20 | - |
| pf:Med26 | 469 | 517 | TFIIS helical bundle-like domain
| 1.8e-05 | - |
| pf:WW | 605 | 633 | WW domain
| 2.9e-06 | - |
| pf:SRI | 697 | 783 | SRI (Set2 Rpb1 interacting) domain
| 1.7e-23 | - |
| pf:Dna2 | 700 | 813 | DNA replication factor Dna2
| 0.095 | - |