SSDB Motif Search Result
Organism :
Pseudomonas putida GB-1
Gene :
PputGB1_2635
Definition :
ligD; ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
Motif id
From
To
Definition
E value
Score
pf:LigD_N
38
142
4.9e-44
-
pf:DNA_ligase_A_M
225
399
ATP dependent DNA ligase domain
4.8e-29
-
pf:mRNA_cap_enzyme
237
342
mRNA capping enzyme, catalytic domain
0.21
-
pf:DNA_ligase_A_C
418
514
ATP dependent DNA ligase C terminal region
7.9e-28
-
pf:YjeF_N
510
587
YjeF-related protein N-terminus
0.089
-
pf:DNA_primase_S
666
733
Eukaryotic and archaeal DNA primase small subunit
0.0045
-
[
GENES
|
KEGG2
|
KEGG
|
GenomeNet
]