| Motif id | From | To | Definition | E value | Score |
| pf:LigD_N | 37 | 141 | | 1.7e-39 | - |
| pf:DNA_ligase_A_M | 230 | 413 | ATP dependent DNA ligase domain
| 1.6e-26 | - |
| pf:RIIa | 356 | 373 | Regulatory subunit of type II PKA R-subunit
| 0.45 | - |
| pf:DNA_ligase_A_C | 432 | 527 | ATP dependent DNA ligase C terminal region
| 8.9e-26 | - |
| pf:DNA_primase_S | 668 | 726 | Eukaryotic and archaeal DNA primase small subunit
| 0.00024 | - |