| Motif id | From | To | Definition | E value | Score |
| pf:LigD_N | 38 | 145 | | 1.5e-42 | - |
| pf:CTK3_C | 142 | 156 | CTD kinase subunit gamma CTK3 C-terminus
| 0.46 | - |
| pf:DNA_ligase_A_M | 257 | 432 | ATP dependent DNA ligase domain
| 4.4e-27 | - |
| pf:DNA_ligase_A_C | 448 | 542 | ATP dependent DNA ligase C terminal region
| 3.9e-25 | - |
| pf:DNA_primase_S | 705 | 830 | Eukaryotic and archaeal DNA primase small subunit
| 0.036 | - |