| Motif id | From | To | Definition | E value | Score |
| pf:DNA_ligase_A_M | 16 | 199 | ATP dependent DNA ligase domain
| 6.6e-30 | - |
| pf:DNA_ligase_A_C | 218 | 310 | ATP dependent DNA ligase C terminal region
| 6.5e-27 | - |
| pf:DNA_primase_S | 467 | 580 | Eukaryotic and archaeal DNA primase small subunit
| 0.0019 | - |