| Entry | SW_score | bits | identity | overlap |
| smx:SM11_pC1145 | 1139 | 265.4 | 0.415 | 482 |
| smx:SM11_chr3425 | 1085 | 253.1 | 0.385 | 480 |
| smx:SM11_pC1622 | 1066 | 248.8 | 0.402 | 468 |
| smx:SM11_chr0607 | 1064 | 248.3 | 0.392 | 480 |
| smx:SM11_pC0693 | 1062 | 247.9 | 0.403 | 474 |
| smx:SM11_chr2659 | 1047 | 244.5 | 0.390 | 479 |
| smx:SM11_pC0876 | 1042 | 243.3 | 0.375 | 477 |
| smx:SM11_pC0422 | 1041 | 243.1 | 0.382 | 477 |
| smx:SM11_pD1198 | 1018 | 237.8 | 0.377 | 472 |
| smx:SM11_pD0789 | 1002 | 234.2 | 0.393 | 468 |
| smx:SM11_pC0618 | 997 | 233.1 | 0.383 | 473 |
| smx:SM11_pD0414 | 975 | 228.0 | 0.362 | 478 |
| smx:SM11_pC0616 | 963 | 225.3 | 0.372 | 460 |
| smx:SM11_pC1600 | 953 | 223.0 | 0.358 | 480 |
| smx:SM11_chr0991 | 928 | 217.3 | 0.345 | 466 |
| smx:SM11_chr3479 | 917 | 214.8 | 0.352 | 472 |
| smx:SM11_pD1235 | 912 | 213.7 | 0.345 | 470 |
| smx:SM11_pD0744 | 891 | 208.9 | 0.346 | 471 |
| smx:SM11_pC0009 | 889 | 208.4 | 0.356 | 464 |
| smx:SM11_pC1139 | 883 | 207.1 | 0.342 | 459 |
| smx:SM11_chr0830 | 860 | 201.8 | 0.343 | 467 |
| smx:SM11_chr0373 | 678 | 160.3 | 0.305 | 486 |
| smx:SM11_chr1047 | 673 | 159.2 | 0.314 | 455 |
| smx:SM11_chr3413 | 660 | 156.2 | 0.312 | 458 |
| smx:SM11_pD0621 | 630 | 149.4 | 0.305 | 465 |
| smx:SM11_chr0102 | 536 | 128.0 | 0.297 | 464 |
| smx:SM11_pD0068 | 446 | 107.5 | 0.281 | 491 |
| smx:SM11_pD1349 | 344 | 84.2 | 0.270 | 471 |
| smx:SM11_chr3286 | 190 | 49.1 | 0.258 | 399 |
| smx:SM11_pC1706 | 100 | 28.6 | 0.352 | 71 |