| Entry | SW_score | bits | identity | overlap |
| syp:SYNPCC7002_A2061 | 1898 | 438.4 | 0.718 | 408 |
| syp:SYNPCC7002_A0708 | 274 | 68.3 | 0.269 | 294 |
| syp:SYNPCC7002_A2421 | 263 | 65.7 | 0.282 | 291 |
| syp:SYNPCC7002_A0755 | 243 | 61.2 | 0.266 | 402 |
| syp:SYNPCC7002_A2062 | 201 | 51.6 | 0.306 | 147 |
| syp:SYNPCC7002_A1701 | 197 | 50.7 | 0.309 | 149 |
| syp:SYNPCC7002_A0341 | 188 | 48.6 | 0.284 | 148 |