| Entry | SW_score | bits | identity | overlap |
| syf:Synpcc7942_2262 | 155 | 41.1 | 0.265 | 219 |
| syf:Synpcc7942_2481 | 133 | 36.1 | 0.324 | 71 |
| syf:Synpcc7942_0894 | 114 | 31.8 | 0.309 | 81 |
| syf:Synpcc7942_1121 | 113 | 31.6 | 0.325 | 83 |
| syf:Synpcc7942_0971 | 112 | 31.3 | 0.300 | 110 |
| syf:Synpcc7942_2517 | 101 | 28.8 | 0.339 | 62 |
| syf:Synpcc7942_0653 | 101 | 28.8 | 0.301 | 133 |
| syf:Synpcc7942_0489 | 100 | 28.6 | 0.318 | 85 |