| Entry | SW_score | bits | identity | overlap |
| smx:SM11_pD0414 | 1418 | 329.0 | 0.464 | 478 |
| smx:SM11_chr0607 | 1106 | 257.9 | 0.407 | 479 |
| smx:SM11_pC0876 | 1098 | 256.1 | 0.400 | 480 |
| smx:SM11_chr3479 | 1021 | 238.5 | 0.365 | 468 |
| smx:SM11_pC0693 | 999 | 233.5 | 0.366 | 476 |
| smx:SM11_chr2659 | 996 | 232.8 | 0.384 | 476 |
| smx:SM11_pC1622 | 988 | 231.0 | 0.374 | 484 |
| smx:SM11_pC0422 | 981 | 229.4 | 0.355 | 476 |
| smx:SM11_pC1139 | 962 | 225.1 | 0.348 | 471 |
| smx:SM11_pC0616 | 961 | 224.9 | 0.351 | 481 |
| smx:SM11_pD0744 | 961 | 224.9 | 0.338 | 453 |
| smx:SM11_pC1600 | 946 | 221.4 | 0.358 | 472 |
| smx:SM11_chr3425 | 937 | 219.4 | 0.336 | 482 |
| smx:SM11_chr0830 | 917 | 214.8 | 0.359 | 487 |
| smx:SM11_pC1145 | 910 | 213.2 | 0.349 | 484 |
| smx:SM11_pD0789 | 896 | 210.0 | 0.360 | 461 |
| smx:SM11_pD1198 | 895 | 209.8 | 0.345 | 478 |
| smx:SM11_chr0373 | 888 | 208.2 | 0.340 | 477 |
| smx:SM11_pC0009 | 883 | 207.1 | 0.358 | 475 |
| smx:SM11_pC0618 | 838 | 196.8 | 0.330 | 485 |
| smx:SM11_chr0991 | 832 | 195.4 | 0.313 | 476 |
| smx:SM11_pD1235 | 825 | 193.9 | 0.287 | 471 |
| smx:SM11_chr1047 | 719 | 169.7 | 0.327 | 422 |
| smx:SM11_pD0621 | 706 | 166.7 | 0.312 | 459 |
| smx:SM11_chr3413 | 695 | 164.2 | 0.308 | 461 |
| smx:SM11_chr0102 | 630 | 149.4 | 0.304 | 461 |
| smx:SM11_pD0068 | 464 | 111.6 | 0.274 | 441 |
| smx:SM11_pD1349 | 304 | 75.1 | 0.261 | 472 |
| smx:SM11_chr3286 | 205 | 52.5 | 0.261 | 284 |