| Entry | SW_score | bits | identity | overlap |
| syf:Synpcc7942_0884 | 1842 | 425.7 | 0.693 | 407 |
| syf:Synpcc7942_1525 | 392 | 95.2 | 0.316 | 301 |
| syf:Synpcc7942_0479 | 296 | 73.3 | 0.257 | 378 |
| syf:Synpcc7942_2020 | 286 | 71.0 | 0.335 | 245 |
| syf:Synpcc7942_2365 | 218 | 55.5 | 0.287 | 202 |
| syf:Synpcc7942_0885 | 205 | 52.5 | 0.290 | 176 |