| Entry | SW_score | bits | identity | overlap |
| smx:SM11_chr0607 | 1268 | 294.8 | 0.417 | 480 |
| smx:SM11_pC0693 | 1249 | 290.5 | 0.404 | 488 |
| smx:SM11_pC0422 | 1244 | 289.4 | 0.414 | 473 |
| smx:SM11_pD0789 | 1222 | 284.3 | 0.406 | 471 |
| smx:SM11_chr3425 | 1208 | 281.2 | 0.385 | 488 |
| smx:SM11_pC1622 | 1201 | 279.6 | 0.395 | 488 |
| smx:SM11_pC0876 | 1190 | 277.1 | 0.395 | 478 |
| smx:SM11_chr2659 | 1183 | 275.5 | 0.431 | 471 |
| smx:SM11_chr0830 | 1183 | 275.5 | 0.408 | 483 |
| smx:SM11_pC1600 | 1167 | 271.8 | 0.411 | 477 |
| smx:SM11_pC1145 | 1127 | 262.7 | 0.390 | 472 |
| smx:SM11_chr0991 | 1126 | 262.5 | 0.375 | 469 |
| smx:SM11_pD0744 | 1103 | 257.2 | 0.370 | 457 |
| smx:SM11_pC0616 | 1095 | 255.4 | 0.370 | 481 |
| smx:SM11_pC1139 | 1092 | 254.7 | 0.389 | 470 |
| smx:SM11_pC0618 | 1088 | 253.8 | 0.372 | 492 |
| smx:SM11_pD1198 | 1063 | 248.1 | 0.374 | 473 |
| smx:SM11_chr3479 | 1053 | 245.8 | 0.350 | 463 |
| smx:SM11_pD1235 | 1033 | 241.3 | 0.350 | 483 |
| smx:SM11_pD0414 | 1006 | 235.1 | 0.357 | 473 |
| smx:SM11_pC0009 | 932 | 218.2 | 0.364 | 473 |
| smx:SM11_chr0373 | 791 | 186.1 | 0.308 | 477 |
| smx:SM11_chr1047 | 704 | 166.3 | 0.303 | 455 |
| smx:SM11_chr3413 | 672 | 159.0 | 0.290 | 458 |
| smx:SM11_pD0621 | 636 | 150.8 | 0.281 | 477 |
| smx:SM11_chr0102 | 610 | 144.8 | 0.292 | 456 |
| smx:SM11_pD0068 | 365 | 89.0 | 0.258 | 511 |
| smx:SM11_pD1349 | 280 | 69.6 | 0.249 | 498 |