| Entry | SW_score | bits | identity | overlap |
| syf:Synpcc7942_0579 | 337 | 82.6 | 0.274 | 394 |
| syf:Synpcc7942_0986 | 288 | 71.4 | 0.291 | 299 |
| syf:Synpcc7942_1918 | 264 | 66.0 | 0.300 | 363 |
| syf:Synpcc7942_0388 | 236 | 59.6 | 0.278 | 227 |
| syf:Synpcc7942_1625 | 230 | 58.2 | 0.239 | 397 |
| syf:Synpcc7942_2518 | 214 | 54.6 | 0.240 | 463 |
| syf:Synpcc7942_0808 | 213 | 54.3 | 0.230 | 439 |
| syf:Synpcc7942_2028 | 207 | 53.0 | 0.288 | 191 |
| syf:Synpcc7942_1901 | 202 | 51.8 | 0.313 | 163 |
| syf:Synpcc7942_2025 | 190 | 49.1 | 0.276 | 214 |