| Entry | SW_score | bits | identity | overlap |
| syf:Synpcc7942_0884 | 1957 | 451.9 | 0.738 | 409 |
| syf:Synpcc7942_1525 | 312 | 76.9 | 0.269 | 275 |
| syf:Synpcc7942_2020 | 285 | 70.8 | 0.332 | 253 |
| syf:Synpcc7942_0479 | 262 | 65.5 | 0.284 | 243 |
| syf:Synpcc7942_2365 | 209 | 53.4 | 0.301 | 156 |
| syf:Synpcc7942_0885 | 196 | 50.5 | 0.298 | 131 |
| syf:Synpcc7942_2082 | 124 | 34.1 | 0.305 | 131 |