| Entry | SW_score | bits | identity | overlap |
| smx:SM11_pD0789 | 1269 | 295.1 | 0.434 | 475 |
| smx:SM11_chr0830 | 1249 | 290.5 | 0.425 | 492 |
| smx:SM11_chr0607 | 1241 | 288.7 | 0.413 | 477 |
| smx:SM11_pC0422 | 1232 | 286.6 | 0.411 | 479 |
| smx:SM11_pC1145 | 1194 | 278.0 | 0.406 | 480 |
| smx:SM11_pC1622 | 1179 | 274.5 | 0.396 | 487 |
| smx:SM11_pC0876 | 1168 | 272.0 | 0.392 | 487 |
| smx:SM11_chr3425 | 1159 | 270.0 | 0.377 | 483 |
| smx:SM11_chr2659 | 1140 | 265.7 | 0.427 | 478 |
| smx:SM11_pC0618 | 1128 | 262.9 | 0.395 | 473 |
| smx:SM11_pC0693 | 1114 | 259.7 | 0.366 | 481 |
| smx:SM11_chr0991 | 1068 | 249.2 | 0.383 | 459 |
| smx:SM11_pD0744 | 1060 | 247.4 | 0.367 | 485 |
| smx:SM11_pC1600 | 1049 | 244.9 | 0.383 | 481 |
| smx:SM11_pD0414 | 1008 | 235.6 | 0.370 | 478 |
| smx:SM11_chr3479 | 1000 | 233.7 | 0.330 | 479 |
| smx:SM11_pC1139 | 967 | 226.2 | 0.351 | 485 |
| smx:SM11_pD1198 | 942 | 220.5 | 0.349 | 476 |
| smx:SM11_pC0616 | 940 | 220.1 | 0.342 | 476 |
| smx:SM11_pD1235 | 925 | 216.6 | 0.324 | 476 |
| smx:SM11_pC0009 | 918 | 215.1 | 0.367 | 485 |
| smx:SM11_chr0373 | 747 | 176.1 | 0.301 | 481 |
| smx:SM11_chr1047 | 712 | 168.1 | 0.333 | 459 |
| smx:SM11_pD0621 | 684 | 161.7 | 0.321 | 467 |
| smx:SM11_chr3413 | 657 | 155.6 | 0.290 | 473 |
| smx:SM11_chr0102 | 556 | 132.5 | 0.294 | 462 |
| smx:SM11_pD0068 | 362 | 88.3 | 0.258 | 516 |
| smx:SM11_pD1349 | 279 | 69.4 | 0.245 | 506 |