| Entry | SW_score | bits | identity | overlap |
| syf:Synpcc7942_0884 | 1935 | 446.9 | 0.711 | 409 |
| syf:Synpcc7942_1525 | 358 | 87.4 | 0.297 | 296 |
| syf:Synpcc7942_2020 | 273 | 68.0 | 0.277 | 397 |
| syf:Synpcc7942_0479 | 268 | 66.9 | 0.255 | 310 |
| syf:Synpcc7942_2365 | 230 | 58.2 | 0.260 | 339 |
| syf:Synpcc7942_0885 | 208 | 53.2 | 0.290 | 169 |