| Entry | SW_score | bits | identity | overlap |
| syf:Synpcc7942_0884 | 1810 | 418.4 | 0.663 | 412 |
| syf:Synpcc7942_1525 | 341 | 83.5 | 0.297 | 303 |
| syf:Synpcc7942_0479 | 264 | 66.0 | 0.271 | 292 |
| syf:Synpcc7942_2020 | 259 | 64.8 | 0.313 | 252 |
| syf:Synpcc7942_0885 | 200 | 51.4 | 0.321 | 131 |
| syf:Synpcc7942_2365 | 194 | 50.0 | 0.295 | 156 |