SSDB Paralog Search Result

KEGG ID :acp:A2cp1_0836 (683 a.a.)
Definition:DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD
Update status:T00833 (aoa,avu,bgy,bhu,boe,btho,jaz,myz,xho : calculation not yet completed)
Show : Best-best Best Paralogs Gene clusters
Threshold:
  

Search Result : 136 hits

                 Entry                                       KO      len   SW-score(margin)  bits  identity overlap  best(all)
------------------------------------------------------------------ -------------------------------------------------------------
acp:A2cp1_0935 DNA ligase D, 3'-phosphoesterase domain  K01971     789      736 (    -)     174    0.317    688      -> 
acp:A2cp1_1020 DNA polymerase LigD, polymerase domain p K01971     313      505 (    -)     121    0.345    290      -> 
acp:A2cp1_0868 ATP dependent DNA ligase                            341      427 (    -)     103    0.349    341      -> 
acp:A2cp1_4312 DNA ligase I, ATP-dependent Dnl1 (EC:6.5 K10747     513      331 (    -)      81    0.324    343      -> 
acp:A2cp1_0260 conserved hypothetical protein                     1238      187 (    -)      48    0.262    543      -> 
acp:A2cp1_1438 ATP-dependent nuclease subunit B-like pr           1029      185 (    -)      48    0.255    718      -> 
acp:A2cp1_2251 N-acetylmuramoyl-L-alanine amidase (EC:3 K01448     603      182 (    -)      47    0.269    547      -> 
acp:A2cp1_3940 TPR repeat-containing protein                      3271      174 (    -)      46    0.268    712      -> 
acp:A2cp1_0514 transglutaminase domain protein                    1431      170 (    -)      45    0.257    713      -> 
acp:A2cp1_0253 Fe-S oxidoreductase                                 439      168 (    -)      44    0.311    322      -> 
acp:A2cp1_1203 conserved hypothetical protein           K09942     466      168 (    -)      44    0.308    247      -> 
acp:A2cp1_2264 PBS lyase HEAT domain protein repeat-con            628      168 (    -)      44    0.276    533      -> 
acp:A2cp1_0839 ATP-dependent helicase HrpB              K03579     860      159 (    -)      42    0.266    759      -> 
acp:A2cp1_4175 General secretory system II protein E do            506      159 (    -)      42    0.410    117      -> 
acp:A2cp1_0826 heat shock protein DnaJ domain protein              618      158 (    -)      42    0.283    460      -> 
acp:A2cp1_2583 CheA signal transduction histidine kinas K03407     711      158 (    -)      42    0.306    324      -> 
acp:A2cp1_4042 Beta-ketoacyl synthase                             2036      157 (    -)      42    0.262    671      -> 
acp:A2cp1_0911 protein of unknown function DUF181       K09136     379      156 (    -)      41    0.264    424      -> 
acp:A2cp1_2210 ATP-dependent DNA helicase RecG          K03655     904      155 (    -)      41    0.260    362      -> 
acp:A2cp1_2390 transcriptional regulator, Fis family               613      153 (    -)      41    0.287    394      -> 
acp:A2cp1_2983 serine/threonine protein kinase          K12132     982      153 (    -)      41    0.271    619      -> 
acp:A2cp1_2987 ABC transporter related                             496      152 (    -)      40    0.281    434      -> 
acp:A2cp1_2765 H+transporting two-sector ATPase C (AC39 K02119     337      151 (    -)      40    0.284    306      -> 
acp:A2cp1_3455 Tetratricopeptide TPR_2 repeat protein             4104      151 (    -)      40    0.282    713      -> 
acp:A2cp1_1446 conserved hypothetical protein                      563      148 (    -)      40    0.300    437      -> 
acp:A2cp1_3642 protein of unknown function DUF748                  955      147 (    -)      39    0.342    152      -> 
acp:A2cp1_2770 MCP methyltransferase, CheR-type (EC:2.1 K00575     490      141 (    -)      38    0.356    163      -> 
acp:A2cp1_4471 CheA signal transduction histidine kinas K03407     684      141 (    -)      38    0.309    223      -> 
acp:A2cp1_1965 histidine kinase                                    662      140 (    -)      38    0.429    91       -> 
acp:A2cp1_2229 serine/threonine protein kinase with TPR K12132     596      135 (    -)      37    0.300    223      -> 
acp:A2cp1_4230 heat shock protein DnaJ domain protein              267      135 (    -)      37    0.327    147      -> 
acp:A2cp1_1202 serine/threonine protein kinase          K12132     695      132 (    -)      36    0.311    241      -> 
acp:A2cp1_4184 conserved hypothetical protein                      366      132 (    -)      36    0.305    233      -> 
acp:A2cp1_0910 TfuA domain protein core                            403      128 (    -)      35    0.345    174      -> 
acp:A2cp1_4421 conserved hypothetical protein                      717      128 (    -)      35    0.305    220      -> 
acp:A2cp1_1926 alpha-2-macroglobulin domain protein     K06894    1971      127 (    -)      35    0.302    222      -> 
acp:A2cp1_1573 Tetratricopeptide domain protein                    278      126 (    -)      35    0.315    178      -> 
acp:A2cp1_0765 conserved hypothetical protein                      217      125 (    -)      34    0.344    93       -> 
acp:A2cp1_1252 conserved hypothetical protein                      402      125 (    -)      34    0.314    191      -> 
acp:A2cp1_1927 glycosyl transferase family 51           K05367     782      125 (    -)      34    0.315    165      -> 
acp:A2cp1_2461 tRNA(Ile)-lysidine synthetase            K04075     450      125 (    -)      34    0.319    182      -> 
acp:A2cp1_3567 Methyltransferase type 11                           242      124 (    -)      34    0.339    186      -> 
acp:A2cp1_0319 histidine kinase                                    707      122 (    -)      34    0.390    59       -> 
acp:A2cp1_0763 response regulator receiver protein                 959      122 (    -)      34    0.333    126      -> 
acp:A2cp1_1568 response regulator receiver protein                 476      121 (    -)      33    0.326    172      -> 
acp:A2cp1_2263 pseudouridine synthase                   K06178     324      121 (    -)      33    0.324    142      -> 
acp:A2cp1_2389 HEAT domain containing protein                      202      121 (    -)      33    0.335    194      -> 
acp:A2cp1_2430 Sporulation domain protein                          242      121 (    -)      33    0.402    82       -> 
acp:A2cp1_1551 ATPase AAA-2 domain protein                         813      120 (    -)      33    0.391    87       -> 
acp:A2cp1_0834 2-oxoglutarate dehydrogenase, E2 subunit K00658     437      119 (    -)      33    0.392    74       -> 
acp:A2cp1_1181 glutamate-ammonia ligase adenylyltransfe K00982    1014      119 (    -)      33    0.345    171      -> 
acp:A2cp1_3915 cytochrome C family protein                         358      119 (    -)      33    0.330    112      -> 
acp:A2cp1_3893 conserved hypothetical protein                      331      118 (    -)      33    0.317    142      -> 
acp:A2cp1_0803 Peptidase M23                                       292      117 (    -)      33    0.311    167      -> 
acp:A2cp1_2985 conserved hypothetical protein                      175      117 (    -)      33    0.356    90       -> 
acp:A2cp1_0009 conserved hypothetical protein                      347      116 (    -)      32    0.417    60       -> 
acp:A2cp1_0422 conserved hypothetical protein                      160      116 (    -)      32    0.303    109      -> 
acp:A2cp1_0616 conserved hypothetical protein                      295      116 (    -)      32    0.333    81       -> 
acp:A2cp1_2555 conserved hypothetical protein                      439      116 (    -)      32    0.305    266      -> 
acp:A2cp1_1288 mucin-associated surface protein (MASP),            238      115 (    -)      32    0.320    100      -> 
acp:A2cp1_3473 putative vgr-related protein                        753      115 (    -)      32    0.321    190      -> 
acp:A2cp1_3929 conserved hypothetical protein                      538      115 (    -)      32    0.303    300      -> 
acp:A2cp1_0489 conserved hypothetical protein                      199      114 (    -)      32    0.304    191      -> 
acp:A2cp1_1315 Hedgehog/intein hint domain protein                1115      114 (    -)      32    0.306    108      -> 
acp:A2cp1_1484 serine/threonine protein kinase                     548      114 (    -)      32    0.302    159      -> 
acp:A2cp1_0959 multiheme cytochrome                                447      113 (    -)      32    0.333    102      -> 
acp:A2cp1_2463 conserved hypothetical protein                      426      113 (    -)      32    0.312    109      -> 
acp:A2cp1_3221 conserved hypothetical protein                      427      113 (    -)      32    0.321    109      -> 
acp:A2cp1_3829 response regulator receiver protein                 713      113 (    -)      32    0.306    147      -> 
acp:A2cp1_0597 Diaminopimelate epimerase (EC:5.1.1.7)   K01778     266      112 (    -)      31    0.302    268      -> 
acp:A2cp1_2563 conserved hypothetical protein                      189      112 (    -)      31    0.308    143      -> 
acp:A2cp1_3327 ribosome small subunit-dependent GTPase  K06949     350      112 (    -)      31    0.318    173      -> 
acp:A2cp1_0781 CRISPR-associated protein, Cse4 family   K19124     413      111 (    -)      31    0.301    143      -> 
acp:A2cp1_1988 translation initiation factor IF-3       K02520     230      111 (    -)      31    0.449    49       -> 
acp:A2cp1_2160 GrpE protein                             K03687     212      111 (    -)      31    0.326    187      -> 
acp:A2cp1_0058 butyrate kinase                          K00929     376      110 (    -)      31    0.377    106      -> 
acp:A2cp1_0296 conserved hypothetical protein                      349      110 (    -)      31    0.359    92       -> 
acp:A2cp1_1355 protein of unknown function DUF52        K06990     265      110 (    -)      31    0.302    149      -> 
acp:A2cp1_1720 Cyclopropane-fatty-acyl-phospholipid syn K00574     440      110 (    -)      31    0.301    246      -> 
acp:A2cp1_2952 conserved hypothetical protein                      402      110 (    -)      31    0.301    166      -> 
acp:A2cp1_2979 type IV pilus assembly PilZ                         326      110 (    -)      31    0.333    180      -> 
acp:A2cp1_1601 conserved hypothetical protein                      384      109 (    -)      31    0.393    89       -> 
acp:A2cp1_2158 ATP-dependent metalloprotease FtsH (EC:3 K03798     706      109 (    -)      31    0.329    149      -> 
acp:A2cp1_0966 putative dihydrolipoamide S-succinyltran            191      108 (    -)      30    0.404    89       -> 
acp:A2cp1_1829 conserved hypothetical protein                      270      108 (    -)      30    0.302    192      -> 
acp:A2cp1_1883 protein of unknown function DUF541       K09807     242      108 (    -)      30    0.395    76       -> 
acp:A2cp1_1915 phosphomethylpyrimidine kinase           K00941     261      108 (    -)      30    0.330    179      -> 
acp:A2cp1_2596 GTP-binding signal recognition particle  K02404     380      108 (    -)      30    0.362    80       -> 
acp:A2cp1_2850 cytochrome c family protein                         309      108 (    -)      30    0.412    68       -> 
acp:A2cp1_2883 gid protein                              K04094     453      108 (    -)      30    0.336    122      -> 
acp:A2cp1_3587 conserved hypothetical protein                      181      108 (    -)      30    0.364    99       -> 
acp:A2cp1_1454 penicillin-binding protein 2 (EC:2.4.1.1 K05515     684      107 (    -)      30    0.324    136      -> 
acp:A2cp1_1921 protein of unknown function DUF214       K02004     842      107 (    -)      30    0.327    165      -> 
acp:A2cp1_3898 conserved hypothetical protein                      346      107 (    -)      30    0.320    175      -> 
acp:A2cp1_4112 MOFRL domain protein                     K11529     430      107 (    -)      30    0.307    166      -> 
acp:A2cp1_4114 NusB/RsmB/TIM44                          K03500     455      107 (    -)      30    0.327    205      -> 
acp:A2cp1_2244 putative transmembrane protein                      269      106 (    -)      30    0.316    187      -> 
acp:A2cp1_2569 OmpA/MotB domain protein                 K02557     259      106 (    -)      30    0.331    142      -> 
acp:A2cp1_2590 flagellar biosynthesis protein FliO                 227      106 (    -)      30    0.336    143      -> 
acp:A2cp1_3096 alpha amylase catalytic region                      479      106 (    -)      30    0.322    205      -> 
acp:A2cp1_4103 2'-5' RNA ligase                         K01975     194      106 (    -)      30    0.301    163      -> 
acp:A2cp1_4155 conserved hypothetical protein                      179      106 (    -)      30    0.343    105      -> 
acp:A2cp1_2477 Collagen triple helix repeat protein                207      105 (    -)      30    0.341    82       -> 
acp:A2cp1_3466 TPR repeat-containing protein                      1191      105 (    -)      30    0.309    188      -> 
acp:A2cp1_3993 RNA polymerase, sigma-24 subunit, ECF su K03088     223      105 (    -)      30    0.373    75       -> 
acp:A2cp1_0906 transcriptional regulator, LuxR family              208      104 (    -)      30    0.302    199      -> 
acp:A2cp1_1481 Heparinase II/III family protein                    702      104 (    -)      30    0.316    152      -> 
acp:A2cp1_1758 transcriptional regulator, LuxR family              374      104 (    -)      30    0.326    135      -> 
acp:A2cp1_2055 Uroporphyrin-III C/tetrapyrrole (Corrin/ K07056     292      104 (    -)      30    0.359    103      -> 
acp:A2cp1_3370 conserved hypothetical protein                      260      104 (    -)      30    0.321    109      -> 
acp:A2cp1_3463 FHA domain containing protein                       680      104 (    -)      30    0.394    66       -> 
acp:A2cp1_4121 conserved hypothetical protein                      305      104 (    -)      30    0.328    177      -> 
acp:A2cp1_2771 CheW protein                             K03408     212      103 (    -)      29    0.312    202      -> 
acp:A2cp1_2876 heat shock protein DnaJ domain protein              319      103 (    -)      29    0.310    268      -> 
acp:A2cp1_3785 putative GAF sensor protein                         302      103 (    -)      29    0.319    138      -> 
acp:A2cp1_3882 FHA domain containing protein                       258      103 (    -)      29    0.360    111      -> 
acp:A2cp1_4065 transcriptional regulator protein-like p K13572     511      103 (    -)      29    0.356    135      -> 
acp:A2cp1_4245 glycosyl transferase group 1                        414      103 (    -)      29    0.324    170      -> 
acp:A2cp1_0683 acetyl-CoA carboxylase, biotin carboxyl  K02160     179      102 (    -)      29    0.333    99       -> 
acp:A2cp1_0831 conserved hypothetical protein                      376      102 (    -)      29    0.357    126      -> 
acp:A2cp1_1170 ribosomal RNA methyltransferase RrmJ/Fts K02427     298      102 (    -)      29    0.371    89       -> 
acp:A2cp1_2892 conserved hypothetical protein                      225      102 (    -)      29    0.341    129      -> 
acp:A2cp1_0806 GAF sensor signal transduction histidine            587      101 (    -)      29    0.303    337      -> 
acp:A2cp1_1789 conserved hypothetical protein                      410      101 (    -)      29    0.373    67       -> 
acp:A2cp1_1864 conserved hypothetical protein                      182      101 (    -)      29    0.378    82       -> 
acp:A2cp1_2011 monofunctional biosynthetic peptidoglyca K03814     307      101 (    -)      29    0.328    131      -> 
acp:A2cp1_2900 type IV pilus assembly PilZ                         296      101 (    -)      29    0.412    51       -> 
acp:A2cp1_3019 conserved hypothetical protein                      919      101 (    -)      29    0.303    99       -> 
acp:A2cp1_3304 outer membrane efflux protein                       440      101 (    -)      29    0.306    144      -> 
acp:A2cp1_4398 phospholipase D/Transphosphatidylase     K06131     464      101 (    -)      29    0.322    87       -> 
acp:A2cp1_4488 PpiC-type peptidyl-prolyl cis-trans isom            354      101 (    -)      29    0.750    20       -> 
acp:A2cp1_0138 ribosomal 5S rRNA E-loop binding protein K02897     240      100 (    -)      29    0.423    52       -> 
acp:A2cp1_1507 peptidase S58 DmpA                       K01266     489      100 (    -)      29    0.354    65       -> 
acp:A2cp1_1724 glycosyl hydrolase, BNR repeat protein              367      100 (    -)      29    0.311    135      -> 
acp:A2cp1_2733 putative PAS/PAC sensor protein                     437      100 (    -)      29    0.304    158      -> 
acp:A2cp1_3040 conserved hypothetical protein                      351      100 (    -)      29    0.319    204      -> 

[ SSDB | GENES | KEGG2 | KEGG | GenomeNet ]