SSDB Paralog Search Result

KEGG ID :amd:AMED_4197 (299 a.a.)
Definition:ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD
Update status:T01269 (acx,baco,bbx,bby,bgp,bpet,bue,cbaa,cbab,ceo,chz,cmq,csx,dmt,fne,fnt,fpi,fpj,fpm,fpx,fpz,hcc,hcd,kpv,ksa,lat,lho,mcan,mcg,mpw,msr,msx,myv,pman,ppro,pses,ron,sbw,shd,tbn,tig,txi,wcl,win,yal,yfr,yin,ykr,yro,yru : calculation not yet completed)
Show : Best-best Best Paralogs Gene clusters
Sort by : SW-score SW-score by species KEGG-species
Search against:All organisms Selected organism group
Threshold:

Search Result : 9 hits

       Entry                                                 KO       len  SW-score  bits  identity overlap
-------------------------------------------------------------------  ----------------------------------------
amd:AMED_3255 ATP-dependent DNA ligase                   K01971     670    1336     310    0.681    295     
amd:AMED_4189 ATP-dependent DNA ligase                   K01971     525     563     134    0.373    292     
amd:AMED_5203 ATP-dependent DNA ligase                   K01971     287     533     127    0.339    274     
amd:AMED_4612 ATP-dependent DNA ligase                              314     472     113    0.309    291     
amd:AMED_4149 ATP-dependent DNA ligase                              334     461     111    0.326    301     
amd:AMED_2655 ATP-dependent DNA ligase                              338     446     108    0.317    290     
amd:AMED_8354 ATP-dependent DNA ligase/DNA primase                  319     416     101    0.353    266     
amd:AMED_3752 AraC family transcriptional regulator                 301     103      29    0.319    91      
amd:AMED_4404 L-arabinose isomerase                      K01804     499     102      29    0.330    109     

[ SSDB | GENES | KEGG2 | KEGG | GenomeNet ]