SSDB Paralog Search Result

KEGG ID :amd:AMED_5203 (287 a.a.)
Definition:ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD
Update status:T01269 (acx,baco,bbx,bby,bgp,bpet,bue,cbaa,cbab,ceo,chz,cmq,csx,dmt,fne,fnt,fpi,fpj,fpm,fpx,fpz,hcc,hcd,kpv,ksa,lat,lho,mcan,mcg,mpw,msr,msx,myv,pman,ppro,pses,ron,sbw,shd,tbn,tig,txi,wcl,win,yal,yfr,yin,ykr,yro,yru : calculation not yet completed)
Show : Best-best Best Paralogs Gene clusters
Sort by : SW-score SW-score by species KEGG-species
Search against:All organisms Selected organism group
Threshold:

Search Result : 11 hits

       Entry                                                 KO       len  SW-score  bits  identity overlap
-------------------------------------------------------------------  ----------------------------------------
amd:AMED_4149 ATP-dependent DNA ligase                              334     640     152    0.371    283     
amd:AMED_4189 ATP-dependent DNA ligase                   K01971     525     590     140    0.391    274     
amd:AMED_3255 ATP-dependent DNA ligase                   K01971     670     589     140    0.385    247     
amd:AMED_4197 ATP-dependent DNA ligase                   K01971     299     533     127    0.339    274     
amd:AMED_4612 ATP-dependent DNA ligase                              314     484     116    0.319    288     
amd:AMED_2655 ATP-dependent DNA ligase                              338     473     114    0.302    288     
amd:AMED_8354 ATP-dependent DNA ligase/DNA primase                  319     471     113    0.339    277     
amd:AMED_2668 peptidase/hydrolase                                   515     115      32    0.300    200     
amd:AMED_4601 DNA helicase-like protein                            1137     111      31    0.317    180     
amd:AMED_7424 hypothetical protein                                  335     106      30    0.367    49      
amd:AMED_7182 3-oxosteroid 1-dehydrogenase                          534     100      29    0.343    99      

[ SSDB | GENES | KEGG2 | KEGG | GenomeNet ]