SSDB Paralog Search Result

KEGG ID :amd:AMED_5275 (355 a.a.)
Definition:ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD
Update status:T01269 (ahh,alu,ari,bado,batr,bcoa,bdl,blr,bmyo,bpeu,bsuc,btha,bub,bul,cabo,cfz,cjl,cjq,cjw,cjy,cpat,ecli,eclx,ecly,eclz,elb,fpt,ftc,ftv,ftz,gfr,hic,hiw,hix,hpyc,hpyd,hpye,hpyf,hpyg,hpyh,hpyj,kmi,kpc,kpne,kpnu,lfa,lhd,magq,mavi,mbx,mcai,mcap,mcar,mfi,mhaq,mhat,mhay,mvs,nin,paeb,pcz,pdf,pfb,pff,pfw,plb,plc,pli,ppse,rhb,rmn,saug,sena,senc,seno,senq,senv,sft,sld,smua,sxo,syh,xcf,xcm,xcn,xcr,xcu,xcw,xdo,xnm,xoy,yee,ypj,ypl,ypv,ypw : calculation not yet completed)
Show : Best-best Best Paralogs Gene clusters
Sort by : SW-score SW-score by species KEGG-species
Search against:All organisms Selected organism group
Threshold:

Search Result : 10 hits

       Entry                                                 KO       len  SW-score  bits  identity overlap
-------------------------------------------------------------------  ----------------------------------------
amd:AMED_4189 ATP-dependent DNA ligase                   K01971     525     429     104    0.425    193     
amd:AMED_3255 ATP-dependent DNA ligase                   K01971     670     276      69    0.324    207     
amd:AMED_4489 ATP-dependent DNA ligase                              123     260      65    0.371    124     
amd:AMED_5204 ATP-dependent DNA ligase                              314     234      59    0.272    191     
amd:AMED_2669 ATP-dependent DNA ligase                              359     225      57    0.307    189     
amd:AMED_8064 ATP-dependent DNA ligase                   K10747     510     200      51    0.284    197     
amd:AMED_4148 ATP-dependent DNA ligase                              354     179      47    0.269    193     
amd:AMED_5018 glycosyl transferase family protein                   603     120      33    0.331    136     
amd:AMED_3975 sugar ABC transporter ATPase               K10441     499     102      29    0.319    141     
amd:AMED_7567 hypothetical protein                                  324     102      29    0.323    124     

[ SSDB | GENES | KEGG2 | KEGG | GenomeNet ]