SSDB Paralog Search Result

KEGG ID :pdx:Psed_4989 (683 a.a.)
Definition:DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD
Update status:T01479 (aoa,avu,bgy,bhu,boe,btho,jaz,myz,xho : calculation not yet completed)
Show : Best-best Best Paralogs Gene clusters
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Search Result : 41 hits

                 Entry                                       KO      len   SW-score(margin)  bits  identity overlap  best(all)
------------------------------------------------------------------ -------------------------------------------------------------
pdx:Psed_3144 histidine kinase internal region          K01971     602      735 (    -)     173    0.387    367      -> 
pdx:Psed_0328 ATP dependent DNA ligase                  K01971     310      649 (    -)     154    0.397    312      -> 
pdx:Psed_2901 DNA polymerase LigD, polymerase domain pr            346      585 (    -)     139    0.356    278      -> 
pdx:Psed_4714 DNA primase small subunit                            323      566 (    -)     135    0.350    283      -> 
pdx:Psed_3272 DNA polymerase LigD, polymerase domain pr K01971     661      503 (    -)     121    0.272    703      -> 
pdx:Psed_0303 DNA polymerase LigD, polymerase domain pr            325      477 (    -)     115    0.355    293      -> 
pdx:Psed_4718 ATP dependent DNA ligase                             356      425 (    -)     103    0.326    344      -> 
pdx:Psed_0956 DNA ligase (EC:6.5.1.1)                   K10747     513      364 (    -)      89    0.316    342      -> 
pdx:Psed_4036 hypothetical protein                                1506      159 (    -)      42    0.261    664      -> 
pdx:Psed_5606 hypothetical protein                                 990      155 (    -)      41    0.254    595      -> 
pdx:Psed_3531 ankyrin                                              504      124 (    -)      34    0.312    224      -> 
pdx:Psed_1128 hypothetical protein                                 320      121 (    -)      33    0.324    148      -> 
pdx:Psed_3588 DNA polymerase I (EC:2.7.7.7)             K02335     939      116 (    -)      32    0.342    158      -> 
pdx:Psed_3989 hypothetical protein                                 246      111 (    -)      31    0.320    147      -> 
pdx:Psed_1987 ribonuclease, Rne/Rng family              K08300    1200      109 (    -)      31    0.330    115      -> 
pdx:Psed_3821 hypothetical protein                                  88      108 (    -)      30    0.365    74       -> 
pdx:Psed_4051 hypothetical protein                                 262      108 (    -)      30    0.312    208      -> 
pdx:Psed_0445 hypothetical protein                                 316      107 (    -)      30    0.322    87       -> 
pdx:Psed_1085 hypothetical protein                                 420      107 (    -)      30    0.300    110      -> 
pdx:Psed_3420 sporulation transcription regulator whiA  K09762     327      107 (    -)      30    0.323    189      -> 
pdx:Psed_5578 ATP-dependent transcriptional regulator,             932      107 (    -)      30    0.307    254      -> 
pdx:Psed_1307 hypothetical protein                                 226      106 (    -)      30    0.309    123      -> 
pdx:Psed_2961 Carbon-monoxide dehydrogenase (acceptor)             800      106 (    -)      30    0.304    161      -> 
pdx:Psed_3084 transcriptional regulator, CdaR                      569      106 (    -)      30    0.322    115      -> 
pdx:Psed_0348 DNA polymerase III, subunits gamma and ta K02343     829      105 (    -)      30    0.310    142      -> 
pdx:Psed_0701 2,4-dichlorophenol 6-monooxygenase (EC:1.            518      105 (    -)      30    0.337    86       -> 
pdx:Psed_3163 Glycine dehydrogenase (decarboxylating)   K00281     964      105 (    -)      30    0.306    124      -> 
pdx:Psed_4710 hypothetical protein                                 163      105 (    -)      30    0.312    109      -> 
pdx:Psed_5199 hypothetical protein                                 368      105 (    -)      30    0.304    171      -> 
pdx:Psed_5732 Transglycosylase-like domain protein                 233      105 (    -)      30    0.355    93       -> 
pdx:Psed_1455 Glyoxalase/bleomycin resistance protein/d            419      104 (    -)      30    0.314    175      -> 
pdx:Psed_3423 UvrABC system protein C                   K03703     742      104 (    -)      30    0.303    178      -> 
pdx:Psed_4566 2-oxoglutarate dehydrogenase, E2 componen K00658     614      104 (    -)      30    0.482    56       -> 
pdx:Psed_5440 hypothetical protein                      K18481     383      104 (    -)      30    0.368    125      -> 
pdx:Psed_1045 phenazine biosynthesis protein PhzF famil K06998     295      103 (    -)      29    0.323    124      -> 
pdx:Psed_3617 hypothetical protein                                 386      103 (    -)      29    0.309    194      -> 
pdx:Psed_5109 protein of unknown function DUF559                   288      101 (    -)      29    0.311    151      -> 
pdx:Psed_5273 Dihydrolipoyl dehydrogenase (EC:1.8.1.4)  K00382     467      101 (    -)      29    0.319    116      -> 
pdx:Psed_3757 carbon monoxide dehydrogenase subunit G              306      100 (    -)      29    0.310    71       -> 
pdx:Psed_4411 FMN-dependent NADH-azoreductase           K01118     208      100 (    -)      29    0.324    102      -> 
pdx:Psed_4538 hypothetical protein                                 207      100 (    -)      29    0.315    124      -> 

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